Rh4CG399600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000783
Physical Location & Seq
Forward (+)
64845456 .. 64849942
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG399600.1

Sequence Viewer

Length: 597 bp
ATGGCTTTGACTCTCTCTCTCGATAGAGAGAAATATTGTCGTTTCGTCTCCTCGGTGAGCGGCGGCGACAAAACTTATCGCTTGCTTCTCTATTCTTATGGCGGCGGCGACAAATCTCTTCGTCCACCTCTATCTTCGGTTAGAGGAGGCGATGTTGCTGATGTTGGTGGGATTGGGATTAGAACTCTGATTGTTCAAATCTGGTTTGGTGGACCTCTTGATAGTGAGGAAGGATCTGCTCTTGATCCGTCGATCGATGGTGATGGTAGCGAGTGGCGCGGCAGCCAGATTGCTTCTATTGGAGGTGGTGGTGCTTGGTGGCTGGGCTGTTGCACGCTACTCCAGAATTGTGAAGCAATTTCAAAACAGGAACCTCTAAAATCAAAAAATGGCCGGATTCGTACGAAATGGTCTGAGCACAGATTTGAATTTCCATTGTGGCAAAAAAGCCACAGTCTTTGTCTTGGTCTGCAAGAATACGCAGAGCTAGCTCAGTCCAGCTCCAGCTGCTACTGCTCAAAATGTCCTTCTGTACTCACCAATTCCCCCATCGACACGTTTTCTCTTCCAATTCGCTTGCTGGTTCCCAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.56

Weight (kDa)

7.51

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 279
AciI CCGC 5 cut(s) 60, 63, 102, 105, 279
AclWI GGATC 2 cut(s) 239, 241
AcoI YGGCCR 1 cut(s) 391
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 2 cut(s) 403, 534
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 3 cut(s) 197, 363, 428
AluBI AGCT 4 cut(s) 487, 491, 501, 507
AluI AGCT 4 cut(s) 487, 491, 501, 507
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 2 cut(s) 239, 241
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 282, 507
ApoI RAATTY 1 cut(s) 428
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 67, 272, 529
AsuNHI GCTAGC 1 cut(s) 487
AvaII GGWCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 294, 494
BccI CCATC 3 cut(s) 251, 257, 557
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 488
BisI GCNGC 7 cut(s) 61, 64, 103, 106, 280, 283, 508
BlsI GCNGC 7 cut(s) 62, 65, 104, 107, 281, 284, 509
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 372, 585
BmtI GCTAGC 1 cut(s) 491
BpmI CTGGAG 2 cut(s) 326, 487
Bsa29I ATCGAT 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 405, 506
BseRI GAGGAG 2 cut(s) 40, 159
BseXI GCAGC 2 cut(s) 294, 494
BseYI CCCAGC 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 394
BsiWI CGTACG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 233, 244, 252
BspACI CCGC 5 cut(s) 60, 63, 102, 105, 279
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 406, 505
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 372, 585
BspOI GCTAGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 239, 241
BsrBI CCGCTC 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 3 cut(s) 233, 244, 252
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 123, 570
BstC8I GCNNGC 4 cut(s) 83, 335, 489, 578
BstDEI CTNAG 2 cut(s) 414, 492
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 236, 247, 255
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 233, 244, 252
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 4 cut(s) 276, 488, 507, 513
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 294, 494
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 165
Cac8I GCNNGC 4 cut(s) 83, 335, 489, 578
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 212
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 402, 533
CspCI CAANNNNNGTGG 2 cut(s) 440, 475
CviQI GTAC 2 cut(s) 402, 533
DdeI CTNAG 2 cut(s) 414, 492
DpnI GATC 3 cut(s) 235, 246, 254
DpnII GATC 3 cut(s) 233, 244, 252
EaeI YGGCCR 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 123, 570
EarI CTCTTC 2 cut(s) 123, 570
Eco47I GGWCC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 52
FaiI YATR 1 cut(s) 99
Fnu4HI GCNGC 7 cut(s) 61, 64, 103, 106, 280, 283, 508
Fsp4HI GCNGC 7 cut(s) 61, 64, 103, 106, 280, 283, 508
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 278
GluI GCNGC 7 cut(s) 61, 64, 103, 106, 280, 283, 508
GsaI CCCAGC 1 cut(s) 326
GsuI CTGGAG 2 cut(s) 326, 487
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 394
HhaI GCGC 1 cut(s) 279
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 10, 397
HpaII CCGG 1 cut(s) 394
HphI GGTGA 3 cut(s) 67, 272, 529
Hpy166II GTNNAC 2 cut(s) 125, 212
Hpy188I TCNGA 2 cut(s) 189, 415
Hpy188III TCNNGA 4 cut(s) 20, 218, 242, 343
Hpy8I GTNNAC 2 cut(s) 125, 212
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 224, 537
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 2 cut(s) 333, 472
HpyF10VI GCNNNNNNNGC 4 cut(s) 276, 488, 507, 513
HpyF3I CTNAG 2 cut(s) 414, 492
HpySE526I ACGT 1 cut(s) 557
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 233, 244, 252
LmnI GCTCC 1 cut(s) 506
LpnPI CCDG 9 cut(s) 187, 299, 308, 353, 356, 407, 511, 517, 566
Lsp1109I GCAGC 2 cut(s) 294, 494
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 557
MalI GATC 3 cut(s) 235, 246, 254
MbiI CCGCTC 1 cut(s) 60
MboI GATC 3 cut(s) 233, 244, 252
MboII GAAGA 3 cut(s) 110, 126, 557
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 5 cut(s) 346, 357, 428, 541, 570
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 8 cut(s) 61, 137, 138, 140, 220, 225, 296, 384
MseI TTAA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 1 cut(s) 394
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 4 cut(s) 276, 488, 507, 513
NdeII GATC 3 cut(s) 233, 244, 252
NheI GCTAGC 1 cut(s) 487
NlaIV GGNNCC 2 cut(s) 372, 585
PfeI GAWTC 1 cut(s) 397
Pfl23II CGTACG 1 cut(s) 401
PkrI GCNGC 7 cut(s) 62, 65, 104, 107, 281, 284, 509
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 322
PspLI CGTACG 1 cut(s) 401
PspN4I GGNNCC 2 cut(s) 372, 585
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 233
PvuI CGATCG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 2 cut(s) 403, 534
RsaNI GTAC 2 cut(s) 402, 533
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 7 cut(s) 61, 64, 103, 106, 280, 283, 508
Sau3AI GATC 3 cut(s) 233, 244, 252
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 420
SetI ASST 9 cut(s) 130, 217, 307, 376, 489, 493, 503, 509, 560
SinI GGWCC 1 cut(s) 212
Sse9I AATT 5 cut(s) 346, 357, 428, 541, 570
SsiI CCGC 5 cut(s) 60, 63, 102, 105, 279
SspI AATATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 1 cut(s) 560
TaqI TCGA 4 cut(s) 21, 251, 255, 552
TasI AATT 5 cut(s) 346, 357, 428, 541, 570
TatI WGTACW 1 cut(s) 532
TauI GCSGC 5 cut(s) 63, 66, 105, 108, 282
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TseI GCWGC 2 cut(s) 282, 507
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 428
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.