Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Forward (+)

53475783 .. 53477622

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAGCAAGTGAGCGGCGGCGACAAAACTTATCGCTTGCTTCTCTATTCTTATGGCGGCGGCGACAAATCTCTTCGTCCACCTCTATCTTCGGTTAGAGGAGGTGATGTTGCTGATGTTAGTGGGATTGGGATTAGAACTTTGATTGTTCAAATCTGGTTTGGTGGACCTCTTGATAGTGAGGATGGATCTGCTCTTGATCTGTCGATCGATGGTGATGGTAGCGAGTGGCGCGGCGGCCAGATTGCTTTTATTAGAGGTGGTGGTGCTTGGTGGAGGGGCTGTGTGCGTCTGAATAGTGAATTTTGGTGGGTTGACGGCTTTTTCTTCTTCTCAAATTCCTCGTTGTATTCTAATGGAGGTAGTGGTGCAGATCTTGGGGCAGGTCCGACTGGCTGTCTTTGGCTCATGTTGGCGCAGTATATGGTCTTTGATGGCGAAGGCGGTAGTTTGCCTAGGGCTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAGCAGTGGCTATGGCGATGGTCGGTGCAGTGCCATCTCTGAGTGTGCGTTGGATCTTGCCAACGATGAAGATCATTACTAGCTTAACAAGATCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

20.82

Weight (kDa)

5.36

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	15
AccII	CGCG	1 cut(s)	234
AciI	CCGC	7 cut(s)	15, 18, 57, 60, 234, 237, 444
AclWI	GGATC	2 cut(s)	196, 551
AcoI	YGGCCR	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	302, 337
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	152
AhdI	GACNNNNNGTC	1 cut(s)	396
AjiI	CACGTC	1 cut(s)	477
AluBI	AGCT	1 cut(s)	573
AluI	AGCT	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	196, 551
AoxI	GGCC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	302, 337
AspA2I	CCTAGG	1 cut(s)	455
AspLEI	GCGC	2 cut(s)	234, 418
AspS9I	GGNCC	2 cut(s)	167, 386
AsuHPI	GGTGA	2 cut(s)	116, 227
AvaII	GGWCC	2 cut(s)	167, 386
AvrII	CCTAGG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	474
BccI	CCATC	6 cut(s)	179, 206, 212, 428, 502, 532
BceAI	ACGGC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	470
BfaI	CTAG	2 cut(s)	456, 570
BfuAI	ACCTGC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	6 cut(s)	16, 19, 58, 61, 235, 238
BlnI	CCTAGG	1 cut(s)	455
BlsI	GCNGC	6 cut(s)	17, 20, 59, 62, 236, 239
Bme18I	GGWCC	2 cut(s)	167, 386
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmgBI	CACGTC	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	167, 386
BpiI	GAAGAC	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	560
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	1 cut(s)	114
BsgI	GTGCAG	2 cut(s)	390, 537
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	240
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	470
Bsp143I	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
BspACI	CCGC	7 cut(s)	15, 18, 57, 60, 234, 237, 444
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	522
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	196, 551
BspTNI	GGTCTC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
BssT1I	CCWWGG	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	530
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	234, 418
BstKTI	GATC	7 cut(s)	191, 202, 210, 376, 546, 564, 584
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	3 cut(s)	188, 373, 543
BstYI	RGATCY	3 cut(s)	188, 373, 543
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	2 cut(s)	501, 525
BtsIMutI	CAGTG	2 cut(s)	501, 525
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	38
CfoI	GCGC	2 cut(s)	234, 418
Cfr13I	GGNCC	2 cut(s)	167, 386
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	278
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	8 cut(s)	240, 282, 321, 396, 406, 461, 500, 573
CviKI_1	RGCY	8 cut(s)	240, 282, 321, 396, 406, 461, 500, 573
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	7 cut(s)	190, 201, 209, 375, 545, 563, 583
DpnII	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
DriI	GACNNNNNGTC	1 cut(s)	396
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	78
Eam1105I	GACNNNNNGTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	167, 386
Eco57I	CTGAAG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	1 cut(s)	412
FaiI	YATR	6 cut(s)	54, 410, 423, 425, 503, 589
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	16, 19, 58, 61, 235, 238
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	6 cut(s)	16, 19, 58, 61, 235, 238
FspBI	CTAG	2 cut(s)	456, 570
GlaI	GCGC	2 cut(s)	233, 417
GluI	GCNGC	6 cut(s)	16, 19, 58, 61, 235, 238
HaeIII	GGCC	1 cut(s)	240
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	234, 418
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	2 cut(s)	232, 416
HinP1I	GCGC	2 cut(s)	232, 416
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HphI	GGTGA	2 cut(s)	116, 227
Hpy166II	GTNNAC	3 cut(s)	80, 167, 316
Hpy188I	TCNGA	3 cut(s)	294, 390, 531
Hpy188III	TCNNGA	2 cut(s)	173, 197
Hpy8I	GTNNAC	3 cut(s)	80, 167, 316
HpyAV	CCTTC	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	2 cut(s)	371, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	530
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	2 cut(s)	232, 416
Kzo9I	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
LpnPI	CCDG	6 cut(s)	142, 254, 369, 378, 447, 504
MaeI	CTAG	2 cut(s)	456, 570
MaeII	ACGT	1 cut(s)	476
MalI	GATC	7 cut(s)	190, 201, 209, 375, 545, 563, 583
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
MboII	GAAGA	6 cut(s)	65, 81, 319, 322, 474, 571
MflI	RGATCY	3 cut(s)	188, 373, 543
MluCI	AATT	2 cut(s)	302, 337
MmeI	TCCRAC	2 cut(s)	413, 521
MnlI	CCTC	9 cut(s)	92, 93, 95, 175, 180, 251, 270, 352, 353
MseI	TTAA	1 cut(s)	575
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
NlaIII	CATG	1 cut(s)	412
PflFI	GACNNNGTC	1 cut(s)	478
PkrI	GCNGC	6 cut(s)	17, 20, 59, 62, 236, 239
Ple19I	CGATCG	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	167, 386
PsuI	RGATCY	3 cut(s)	188, 373, 543
PsyI	GACNNNGTC	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	6 cut(s)	16, 19, 58, 61, 235, 238
Sau3AI	GATC	7 cut(s)	188, 199, 207, 373, 543, 561, 581
Sau96I	GGNCC	2 cut(s)	167, 386
SetI	ASST	8 cut(s)	85, 106, 172, 262, 364, 388, 479, 575
SinI	GGWCC	2 cut(s)	167, 386
Sse9I	AATT	2 cut(s)	302, 337
SsiI	CCGC	7 cut(s)	15, 18, 57, 60, 234, 237, 444
SspMI	CTAG	2 cut(s)	456, 570
StyI	CCWWGG	1 cut(s)	455
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	2 cut(s)	206, 210
TasI	AATT	2 cut(s)	302, 337
TauI	GCSGC	6 cut(s)	18, 21, 60, 63, 237, 240
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	2 cut(s)	501, 525
TspDTI	ATGAA	2 cut(s)	17, 572
TspRI	CASTG	2 cut(s)	501, 525
Tth111I	GACNNNGTC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	167, 386
XapI	RAATTY	2 cut(s)	302, 337
XmaJI	CCTAGG	1 cut(s)	455
XspI	CTAG	2 cut(s)	456, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.