Rh1BG030300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000783
Physical Location & Seq
Forward (+)
4076958 .. 4077386
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG030300.1

Sequence Viewer

Length: 429 bp
ATGGCGGGCATGTCCTCCCTTCTTATGTCCGGCTGGTTCGTGGGTGGCGGTGGTGGGGGTGCCCTCCGGCGTGCCCATCTGACTTTTCTTTGTGGTTTCCTTCGCGGTCTAAGGATCATGATGGATGTTGGACATTGGCTGCTTCCGACGTCGTCTTGTTTGGGAGACAGTCTGGTGGCGGATGGATTTGATTGTGGAACCGATGGAGGTCGTCGGGGTTGGTATGTCGGCAAAACCCAATTTCGGGCGTTTGAGGCCGCTTCGGAGCAAGGATCGGTGGCAGATCGTGCAGAGCCTCCGTCTACTGTGCTTCCAGGCTTTCGGCGCTGGGCATGGACTATACTTGAAAGCGATACCGACGGAGGTTTTGGGTTGGATGACTGGAGATTTACAGTGATGGAGGTCGATGGCGGCGTCAGACCGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.3

Weight (kDa)

5.11

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 302
AccII CGCG 1 cut(s) 105
AciI CCGC 6 cut(s) 5, 48, 105, 179, 258, 411
AclWI GGATC 2 cut(s) 122, 280
AcyI GRCGYC 2 cut(s) 149, 414
AfiI CCNNNNNNNGG 2 cut(s) 243, 244
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 122, 280
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspLEI GCGC 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 64, 76
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 126
BccI CCATC 6 cut(s) 84, 115, 176, 197, 391, 401
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 3 cut(s) 140, 258, 412
BlsI GCNGC 3 cut(s) 141, 259, 413
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 61, 199
BmrFI CCNGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 403
BsaHI GRCGYC 2 cut(s) 149, 414
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 244
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 130, 187, 382
BseLI CCNNNNNNNGG 2 cut(s) 243, 244
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 2 cut(s) 64, 76
BseXI GCAGC 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 3 cut(s) 30, 67, 422
BslI CCNNNNNNNGG 2 cut(s) 243, 244
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 64, 76
Bsp143I GATC 3 cut(s) 114, 272, 283
BspACI CCGC 6 cut(s) 5, 48, 105, 179, 258, 411
BspANI GGCC 1 cut(s) 257
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 61, 199
BspPI GGATC 2 cut(s) 122, 280
BspT107I GGYRCC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 386
BssMI GATC 3 cut(s) 114, 272, 283
BssNI GRCGYC 2 cut(s) 149, 414
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 170, 307, 394
BstACI GRCGYC 2 cut(s) 149, 414
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 7, 72
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 3 cut(s) 130, 187, 382
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 117, 275, 286
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 114, 272, 283
BstMWI GCNNNNNNNGC 3 cut(s) 254, 287, 324
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 64, 76
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 3 cut(s) 130, 187, 382
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 7, 72
CciI TCATGA 1 cut(s) 117
CfoI GCGC 1 cut(s) 327
CseI GACGC 1 cut(s) 403
CviAII CATG 3 cut(s) 10, 118, 333
CviJI RGCY 5 cut(s) 33, 139, 257, 295, 318
CviKI_1 RGCY 5 cut(s) 33, 139, 257, 295, 318
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 116, 274, 285
DpnII GATC 3 cut(s) 114, 272, 283
EciI GGCGGA 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 13, 121, 336
FaiI YATR 6 cut(s) 11, 26, 119, 225, 334, 341
FatI CATG 3 cut(s) 9, 117, 332
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 140, 258, 412
FokI GGATG 3 cut(s) 137, 194, 389
Fsp4HI GCNGC 3 cut(s) 140, 258, 412
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 140, 258, 412
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 257
HapII CCGG 3 cut(s) 30, 67, 422
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 2 cut(s) 149, 414
Hin1II CATG 3 cut(s) 13, 121, 336
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HpaII CCGG 3 cut(s) 30, 67, 422
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 4 cut(s) 81, 147, 265, 419
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 4 cut(s) 151, 154, 216, 362
HpyAV CCTTC 2 cut(s) 29, 110
HpyCH4III ACNGT 3 cut(s) 170, 307, 394
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 287, 324
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 2 cut(s) 149, 414
Hsp92II CATG 3 cut(s) 13, 121, 336
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 3 cut(s) 114, 272, 283
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 19, 43, 80, 158, 300, 313, 327, 367
Lsp1109I GCAGC 1 cut(s) 126
MaeII ACGT 1 cut(s) 149
MalI GATC 3 cut(s) 116, 274, 285
MboI GATC 3 cut(s) 114, 272, 283
MhlI GDGCHC 2 cut(s) 64, 76
MluCI AATT 1 cut(s) 239
MmeI TCCRAC 3 cut(s) 109, 170, 354
MnlI CCTC 7 cut(s) 25, 74, 200, 247, 306, 356, 394
MspI CCGG 3 cut(s) 30, 67, 422
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 254, 287, 324
NdeII GATC 3 cut(s) 114, 272, 283
NlaIII CATG 3 cut(s) 13, 121, 336
NlaIV GGNNCC 2 cut(s) 61, 199
NspI RCATGY 1 cut(s) 13
PagI TCATGA 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 141, 259, 413
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 61, 199
PsyI GACNNNGTC 1 cut(s) 151
SatI GCNGC 3 cut(s) 140, 258, 412
Sau3AI GATC 3 cut(s) 114, 272, 283
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 64, 76
SetI ASST 4 cut(s) 152, 211, 367, 405
Sse9I AATT 1 cut(s) 239
SsiI CCGC 6 cut(s) 5, 48, 105, 179, 258, 411
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 170, 307, 394
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 239
TauI GCSGC 2 cut(s) 260, 414
TscAI CASTG 1 cut(s) 399
TseI GCWGC 1 cut(s) 139
TspGWI ACGGA 2 cut(s) 288, 375
TspRI CASTG 1 cut(s) 399
Tth111I GACNNNGTC 1 cut(s) 151
XceI RCATGY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 302
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.