Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007019.1

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

49561 .. 53298

Gene Structure 3738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007019.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggaggccgtcgggtttttggggttatcagaaatctattatttgttggtgatgattgagaagtcagggggagtggtgttggaagcggaaaaggctaccgatttagatggttttagggtgagggggagagggggaaagaagaggaggctaaactggaaaggatccaaaaagagaaaacacagtgatgaaaagaaactcttattccattgtagaaatggttggtatgggaaaaattgtggcaccggaggagaggggggattcgaccaagaagagcaacctgctaaagatctggcctatttgaacatcctcggactattcgaaggtcttaaggcgattagaacagaagatggtcatattcacagcaggctaccacccgcctgcacgaccccccctcacacgcccagcctacatcaccggcctccatctcgatccagcgacaacaacatccccgccccagcagcctacccgccttcacccatcgctgctgcagcaacccgcctgcgtcgatcccagtaccgatccttgcagcaccagacttcggcgaccagacctgcacctgctcctcacactcctactagtaggttttttcaacccagaccagatgatctccggtccatttcctacctaaactcatcgaagaacgacgaacgagattccagcgactcaaaagcaatagccaccgtacccagacctctgacgattagatttgcagaacaagtcccggaccaacctgcttcgacgacccagattgaggcactacacccaccttcaaaccagacggagaaagaagaagagcaaaaggaggaagacgcgaaagaaaaaaaaaagagaaaacaaaaaacaaaaaaagagctgacccggaaaaaagaaaagagccggcccaattgtcaaaaaaaaaaaaaaaagggaagctggcctgaggcccagaaaaaaaaaacaaagaaaaaaaggaaacaggtcctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.22

Weight (kDa)

9.99

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	4 cut(s)	286, 559, 565, 739
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	1 cut(s)	812
AciI	CCGC	5 cut(s)	86, 375, 450, 467, 496
AclWI	GGATC	5 cut(s)	156, 169, 423, 501, 513
AfaI	GTAC	2 cut(s)	515, 684
AfiI	CCNNNNNNNGG	2 cut(s)	538, 751
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	301, 590, 771
AhlI	ACTAGT	1 cut(s)	575
AluBI	AGCT	2 cut(s)	853, 912
AluI	AGCT	2 cut(s)	853, 912
AlwI	GGATC	5 cut(s)	156, 169, 423, 501, 513
AlwNI	CAGNNNCTG	1 cut(s)	961
AoxI	GGCC	6 cut(s)	6, 291, 416, 878, 914, 921
ApeKI	GCWGC	5 cut(s)	458, 482, 485, 488, 526
AspS9I	GGNCC	5 cut(s)	612, 724, 879, 922, 958
AsuC2I	CCSGG	2 cut(s)	722, 859
AsuHPI	GGTGA	4 cut(s)	61, 130, 404, 465
AsuII	TTCGAA	1 cut(s)	318
AvaII	GGWCC	3 cut(s)	612, 724, 958
AxyI	CCTNAGG	1 cut(s)	918
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	813
BbvI	GCAGC	5 cut(s)	469, 470, 472, 500, 538
BccI	CCATC	4 cut(s)	101, 341, 430, 485
BcnI	CCSGG	2 cut(s)	722, 859
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	4 cut(s)	286, 559, 565, 739
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	5 cut(s)	459, 483, 486, 489, 527
BlsI	GCNGC	5 cut(s)	460, 484, 487, 490, 528
Bme1390I	CCNGG	2 cut(s)	722, 859
Bme18I	GGWCC	3 cut(s)	612, 724, 958
BmgT120I	GGNCC	5 cut(s)	612, 724, 879, 922, 958
BmiI	GGNNCC	2 cut(s)	163, 241
BmrFI	CCNGG	2 cut(s)	722, 859
BmrI	ACTGGG	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	722, 859
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	2 cut(s)	242, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 751
Bse118I	RCCGGY	2 cut(s)	414, 876
Bse1I	ACTGG	2 cut(s)	158, 511
Bse21I	CCTNAGG	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	2 cut(s)	303, 444
BseLI	CCNNNNNNNGG	2 cut(s)	538, 751
BseMII	CTCAG	1 cut(s)	909
BseNI	ACTGG	2 cut(s)	158, 511
BseRI	GAGGAG	3 cut(s)	157, 261, 552
BseXI	GCAGC	5 cut(s)	469, 470, 472, 500, 538
BseYI	CCCAGC	2 cut(s)	401, 454
BsgI	GTGCAG	2 cut(s)	364, 537
Bsh1236I	CGCG	1 cut(s)	812
BshFI	GGCC	6 cut(s)	8, 293, 418, 880, 916, 923
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	6 cut(s)	243, 415, 610, 722, 859, 877
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	2 cut(s)	538, 751
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	6 cut(s)	8, 293, 418, 880, 916, 923
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
BspACI	CCGC	5 cut(s)	86, 375, 450, 467, 496
BspANI	GGCC	6 cut(s)	8, 293, 418, 880, 916, 923
BspCNI	CTCAG	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	812
BspLI	GGNNCC	2 cut(s)	163, 241
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	4 cut(s)	286, 559, 565, 739
BspPI	GGATC	5 cut(s)	156, 169, 423, 501, 513
BspQI	GCTCTTC	2 cut(s)	264, 786
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	414, 876
BsrI	ACTGG	2 cut(s)	158, 511
BssAI	RCCGGY	2 cut(s)	414, 876
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
Bst4CI	ACNGT	2 cut(s)	182, 682
Bst6I	CTCTTC	3 cut(s)	134, 264, 786
BstAFI	CTTAAG	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	5 cut(s)	365, 379, 500, 878, 914
BstDEI	CTNAG	1 cut(s)	918
BstF5I	GGATG	2 cut(s)	303, 444
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	6 cut(s)	164, 289, 431, 509, 521, 607
BstMBI	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 458, 488
BstSCI	CCNGG	2 cut(s)	720, 857
BstSFI	CTRYAG	1 cut(s)	486
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	5 cut(s)	469, 470, 472, 500, 538
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	2 cut(s)	161, 286
BstYI	RGATCY	2 cut(s)	161, 286
Bsu36I	CCTNAGG	1 cut(s)	918
BsuRI	GGCC	6 cut(s)	8, 293, 418, 880, 916, 923
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	303, 444
BtsIMutI	CAGTG	1 cut(s)	187
BveI	ACCTGC	4 cut(s)	286, 559, 565, 739
Cac8I	GCNNGC	5 cut(s)	365, 379, 500, 878, 914
CaiI	CAGNNNCTG	1 cut(s)	961
Cfr10I	RCCGGY	2 cut(s)	414, 876
Cfr13I	GGNCC	5 cut(s)	612, 724, 879, 922, 958
CseI	GACGC	2 cut(s)	491, 818
Csp6I	GTAC	2 cut(s)	514, 683
CviQI	GTAC	2 cut(s)	514, 683
DdeI	CTNAG	1 cut(s)	918
DpnI	GATC	6 cut(s)	163, 288, 430, 508, 520, 606
DpnII	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
Eam1104I	CTCTTC	3 cut(s)	134, 264, 786
EarI	CTCTTC	3 cut(s)	134, 264, 786
Eco47I	GGWCC	3 cut(s)	612, 724, 958
Eco81I	CCTNAGG	1 cut(s)	918
EcoO109I	RGGNCCY	1 cut(s)	958
FaiI	YATR	2 cut(s)	225, 354
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	704
FauI	CCCGC	4 cut(s)	382, 457, 474, 503
Fnu4HI	GCNGC	5 cut(s)	459, 483, 486, 489, 527
FokI	GGATG	2 cut(s)	290, 431
Fsp4HI	GCNGC	5 cut(s)	459, 483, 486, 489, 527
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	5 cut(s)	459, 483, 486, 489, 527
GsaI	CCCAGC	2 cut(s)	405, 458
HaeIII	GGCC	6 cut(s)	8, 293, 418, 880, 916, 923
HapII	CCGG	6 cut(s)	243, 415, 610, 722, 859, 877
HgaI	GACGC	2 cut(s)	491, 818
HinfI	GANTC	3 cut(s)	258, 653, 662
HpaII	CCGG	6 cut(s)	243, 415, 610, 722, 859, 877
HphI	GGTGA	4 cut(s)	61, 130, 404, 465
Hpy188I	TCNGA	3 cut(s)	31, 311, 696
Hpy188III	TCNNGA	1 cut(s)	426
Hpy99I	CGWCG	4 cut(s)	14, 507, 647, 742
HpyAV	CCTTC	3 cut(s)	314, 480, 777
HpyCH4III	ACNGT	2 cut(s)	182, 682
HpyCH4V	TGCA	5 cut(s)	381, 488, 526, 554, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 458, 488
HpyF3I	CTNAG	1 cut(s)	918
KroI	GCCGGC	1 cut(s)	876
KroNI	GCCGGC	1 cut(s)	878
Kzo9I	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
LguI	GCTCTTC	2 cut(s)	264, 786
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	5 cut(s)	469, 470, 472, 500, 538
MaeI	CTAG	1 cut(s)	576
MalI	GATC	6 cut(s)	163, 288, 430, 508, 520, 606
MboI	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
MboII	GAAGA	7 cut(s)	151, 281, 356, 649, 800, 803, 818
MfeI	CAATTG	1 cut(s)	883
MflI	RGATCY	2 cut(s)	161, 286
MluCI	AATT	2 cut(s)	232, 883
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	876
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	6 cut(s)	243, 415, 610, 722, 859, 877
MspR9I	CCNGG	2 cut(s)	722, 859
MunI	CAATTG	1 cut(s)	883
MvnI	CGCG	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	92, 458, 488
NaeI	GCCGGC	1 cut(s)	878
NciI	CCSGG	2 cut(s)	722, 859
NdeII	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
NgoMIV	GCCGGC	1 cut(s)	876
NlaIV	GGNNCC	2 cut(s)	163, 241
NspV	TTCGAA	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	565
PciSI	GCTCTTC	2 cut(s)	264, 786
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	878
PfeI	GAWTC	2 cut(s)	258, 653
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	5 cut(s)	460, 484, 487, 490, 528
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	958
Psp5II	RGGWCCY	1 cut(s)	958
PspFI	CCCAGC	2 cut(s)	401, 454
PspN4I	GGNNCC	2 cut(s)	163, 241
PspPI	GGNCC	5 cut(s)	612, 724, 879, 922, 958
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	961
PsuI	RGATCY	2 cut(s)	161, 286
RsaI	GTAC	2 cut(s)	515, 684
RsaNI	GTAC	2 cut(s)	514, 683
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	2 cut(s)	264, 786
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	459, 483, 486, 489, 527
Sau3AI	GATC	6 cut(s)	161, 286, 428, 506, 518, 604
Sau96I	GGNCC	5 cut(s)	612, 724, 879, 922, 958
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	722, 859
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	3 cut(s)	612, 724, 958
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SpeI	ACTAGT	1 cut(s)	575
Sse9I	AATT	2 cut(s)	232, 883
SsiI	CCGC	5 cut(s)	86, 375, 450, 467, 496
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	2 cut(s)	720, 857
TaaI	ACNGT	2 cut(s)	182, 682
TaqI	TCGA	6 cut(s)	261, 318, 427, 505, 635, 737
TasI	AATT	2 cut(s)	232, 883
TfiI	GAWTC	2 cut(s)	258, 653
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	5 cut(s)	458, 482, 485, 488, 526
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	3 cut(s)	612, 724, 958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.