Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

24191341 .. 24196005

Gene Structure 4665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G018750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGATGGTATGGGAAACACTGTAGCACGATGGAATGCGAGAAGAGTCAATCTTTTCTGGCTTCTTTTGCAACTTCCAACCTATCCGTTGAGCAACTACGTAAATGACATGGAGGAGCTGACGTTGTTTACCAAGAAAGACTACCTGCTCCATATCCGAAGAAACATGACAAGCTTTCCCAGGACAATGTCCAAATATAGTGGAGTTTCAAGACTTATAATCATTAAATCAGATCTCTTCTTTGCAATTCCAACAGAACTCAATACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

89

Amino Acids

10.49

Weight (kDa)

9.77

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	118, 174
AluI	AGCT	2 cut(s)	118, 174
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	153
BglII	AGATCT	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	181
BsaAI	YACGTR	2 cut(s)	100, 267
BsaJI	CCNNGG	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	37, 242
BstBAI	YACGTR	2 cut(s)	100, 267
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	21
BstSNI	TACGTA	2 cut(s)	100, 267
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	109, 166
CviJI	RGCY	3 cut(s)	61, 118, 174
CviKI_1	RGCY	3 cut(s)	61, 118, 174
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	37, 242
EarI	CTCTTC	2 cut(s)	37, 242
Eco105I	TACGTA	2 cut(s)	100, 267
EcoRII	CCWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	112, 169
FaiI	YATR	6 cut(s)	11, 110, 153, 167, 198, 218
FatI	CATG	2 cut(s)	108, 165
FokI	GGATG	1 cut(s)	17
Hin1II	CATG	2 cut(s)	112, 169
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	158, 232
Hpy188III	TCNNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	3 cut(s)	99, 122, 266
HpyCH4V	TGCA	2 cut(s)	70, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	3 cut(s)	99, 122, 266
Hsp92II	CATG	2 cut(s)	112, 169
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	115, 153
LpnPI	CCDG	4 cut(s)	43, 158, 166, 193
MaeII	ACGT	3 cut(s)	99, 122, 266
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	54, 171, 229
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	112, 169
PctI	GAATGC	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	2 cut(s)	100, 267
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	7 cut(s)	83, 102, 120, 125, 147, 176, 269
SfcI	CTRYAG	1 cut(s)	21
SnaBI	TACGTA	2 cut(s)	100, 267
Sse9I	AATT	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	3 cut(s)	102, 125, 269
TasI	AATT	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.