Rh2AG674000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000783
Physical Location & Seq
Reverse (-)
88613015 .. 88620819
7805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG674000.1

Sequence Viewer

Length: 606 bp
ATGACGGCGGAGGATTTGATCTTCGATGGTGGGGGCGGTACTTTGTCCGGAGGCGGCGAAGGCTTCTGGTTGAAATCTGACCCCCTTGAAAATGGAGTAGAAGGTGGAGGTGCAGTGATGCTACTGGCTGTACTTGAAAGGGATGTCGGCGGAGGTTCTGGGGTGGAAGATTGGAGATCTACGGTGACGGAGGTCAACGGCGACTTACGATCTGAGTGGGCTGCCTTGTCTCCTTGCTGGGCAGATTGCTTCTGGGATCCTTGCTTTGGGCTTTCTGGGCTAGGGTTGACAGGATGGGCTTTGTCCCATGACTGGCAGTGGGTAGACTGGGTCTTAAGCCTGTTCAAGGCCTGGTCTGTCTTTGGAATGGGGGTGGAGGCTGCACACTCCTATGCGAGGTTAACATGCATACCGAATGAGTTCTTTATTATTTCGGCTGCACACTCTTGTGCGAGGTCAACATGCATACCGAATGAGAAGAGTTGGGACTCCCTCAACGAGTATTCAGATCCGACGGTGTACAATGATCATCTTGTTAACAGAGTGGGCTCCATGAAGAGTAATTTCCGACAATCGCCGCTGATACCGGCTTCACCATTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.78

Weight (kDa)

4.43

Isoelectric Point (pI)

30.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 5 cut(s) 8, 36, 54, 150, 578
AclWI GGATC 3 cut(s) 251, 264, 503
AfaI GTAC 3 cut(s) 40, 132, 521
AfiI CCNNNNNNNGG 4 cut(s) 266, 312, 346, 396
AflII CTTAAG 1 cut(s) 334
AgsI TTSAA 4 cut(s) 73, 89, 137, 346
AjnI CCWGG 1 cut(s) 350
AleI CACNNNNGTG 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 3 cut(s) 251, 264, 503
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 221, 380, 437
Asp700I GAANNNNTTC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 196, 585
BamHI GGATCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 551
BbvI GCAGC 3 cut(s) 208, 367, 424
BccI CCATC 2 cut(s) 20, 288
BceAI ACGGC 2 cut(s) 21, 214
BciT130I CCWGG 1 cut(s) 352
BclI TGATCA 1 cut(s) 526
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 334
BglII AGATCT 1 cut(s) 176
BisI GCNGC 5 cut(s) 55, 222, 381, 438, 578
BlsI GCNGC 5 cut(s) 56, 223, 382, 439, 579
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 258, 550
BmrFI CCNGG 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 337
BoxI GACNNNNGTC 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 312, 346, 396
Bse118I RCCGGY 1 cut(s) 586
Bse1I ACTGG 3 cut(s) 129, 317, 332
BseAI TCCGGA 1 cut(s) 47
BseBI CCWGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 148, 299
BseLI CCNNNNNNNGG 4 cut(s) 266, 312, 346, 396
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 129, 317, 332
BseXI GCAGC 3 cut(s) 208, 367, 424
BseYI CCCAGC 1 cut(s) 237
BsgI GTGCAG 3 cut(s) 132, 366, 423
BshFI GGCC 1 cut(s) 350
BsiSI CCGG 2 cut(s) 48, 587
BslFI GGGAC 2 cut(s) 289, 500
BslI CCNNNNNNNGG 4 cut(s) 266, 312, 346, 396
BsmAI GTCTC 1 cut(s) 234
BsmFI GGGAC 2 cut(s) 289, 500
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 551
Bsp13I TCCGGA 1 cut(s) 47
Bsp1407I TGTACA 1 cut(s) 519
Bsp143I GATC 6 cut(s) 18, 176, 209, 256, 508, 526
BspACI CCGC 5 cut(s) 8, 36, 54, 150, 578
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 258, 550
BspPI GGATC 3 cut(s) 251, 264, 503
BspTI CTTAAG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 586
BsrGI TGTACA 1 cut(s) 519
BsrI ACTGG 3 cut(s) 129, 317, 332
BssAI RCCGGY 1 cut(s) 586
BssMI GATC 6 cut(s) 18, 176, 209, 256, 508, 526
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 184, 517
Bst6I CTCTTC 2 cut(s) 473, 551
BstAFI CTTAAG 1 cut(s) 334
BstAUI TGTACA 1 cut(s) 519
BstDEI CTNAG 1 cut(s) 213
BstENI CCTNNNNNAGG 2 cut(s) 344, 394
BstF5I GGATG 2 cut(s) 148, 299
BstKTI GATC 6 cut(s) 21, 179, 212, 259, 511, 529
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 6 cut(s) 18, 176, 209, 256, 508, 526
BstMWI GCNNNNNNNGC 2 cut(s) 60, 277
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 408, 465
BstPAI GACNNNNGTC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 208, 367, 424
BstX2I RGATCY 3 cut(s) 176, 256, 508
BstYI RGATCY 3 cut(s) 176, 256, 508
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 2 cut(s) 148, 299
BtsI GCAGTG 2 cut(s) 120, 323
BtsIMutI CAGTG 2 cut(s) 120, 323
Cfr10I RCCGGY 1 cut(s) 586
Csp6I GTAC 3 cut(s) 39, 131, 520
CviAII CATG 4 cut(s) 308, 405, 462, 553
CviQI GTAC 3 cut(s) 39, 131, 520
DdeI CTNAG 1 cut(s) 213
DpnI GATC 6 cut(s) 20, 178, 211, 258, 510, 528
DpnII GATC 6 cut(s) 18, 176, 209, 256, 508, 526
Eam1104I CTCTTC 2 cut(s) 473, 551
EarI CTCTTC 2 cut(s) 473, 551
EciI GGCGGA 2 cut(s) 23, 165
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 551
EcoNI CCTNNNNNAGG 2 cut(s) 344, 394
EcoRII CCWGG 1 cut(s) 350
EcoT22I ATGCAT 2 cut(s) 410, 467
EcoT38I GRGCYC 1 cut(s) 551
FaeI CATG 4 cut(s) 311, 408, 465, 556
FaiI YATR 7 cut(s) 309, 393, 406, 410, 463, 467, 554
FaqI GGGAC 2 cut(s) 289, 500
FatI CATG 4 cut(s) 307, 404, 461, 552
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 5 cut(s) 55, 222, 381, 438, 578
FokI GGATG 2 cut(s) 155, 306
FriOI GRGCYC 1 cut(s) 551
Fsp4HI GCNGC 5 cut(s) 55, 222, 381, 438, 578
FspBI CTAG 1 cut(s) 281
GluI GCNGC 5 cut(s) 55, 222, 381, 438, 578
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 48, 587
Hin1II CATG 4 cut(s) 311, 408, 465, 556
HincII GTYRAC 5 cut(s) 196, 288, 402, 459, 538
HindII GTYRAC 5 cut(s) 196, 288, 402, 459, 538
HinfI GANTC 1 cut(s) 488
HpaI GTTAAC 2 cut(s) 402, 538
HpaII CCGG 2 cut(s) 48, 587
HphI GGTGA 2 cut(s) 196, 585
Hpy166II GTNNAC 7 cut(s) 196, 288, 325, 402, 459, 520, 538
Hpy188I TCNGA 6 cut(s) 79, 214, 508, 513, 569, 605
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 7 cut(s) 196, 288, 325, 402, 459, 520, 538
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 2 cut(s) 53, 95
HpyCH4III ACNGT 2 cut(s) 184, 517
HpyCH4V TGCA 5 cut(s) 113, 383, 408, 440, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 277
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 4 cut(s) 311, 408, 465, 556
Kpn2I TCCGGA 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 526
KspAI GTTAAC 2 cut(s) 402, 538
Kzo9I GATC 6 cut(s) 18, 176, 209, 256, 508, 526
LmnI GCTCC 1 cut(s) 554
Lsp1109I GCAGC 3 cut(s) 208, 367, 424
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 184
MalI GATC 6 cut(s) 20, 178, 211, 258, 510, 528
MboI GATC 6 cut(s) 18, 176, 209, 256, 508, 526
MboII GAAGA 4 cut(s) 13, 179, 490, 568
MflI RGATCY 3 cut(s) 176, 256, 508
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 1 cut(s) 562
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 536, 592
MnlI CCTC 9 cut(s) 4, 44, 101, 146, 184, 370, 390, 447, 503
Mph1103I ATGCAT 2 cut(s) 410, 467
MroI TCCGGA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 335, 401, 537
MslI CAYNNNNRTG 2 cut(s) 390, 447
MspA1I CMGCKG 1 cut(s) 580
MspCI CTTAAG 1 cut(s) 334
MspI CCGG 2 cut(s) 48, 587
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 2 cut(s) 60, 277
NdeII GATC 6 cut(s) 18, 176, 209, 256, 508, 526
NlaIII CATG 4 cut(s) 311, 408, 465, 556
NlaIV GGNNCC 2 cut(s) 258, 550
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 2 cut(s) 410, 467
NspI RCATGY 2 cut(s) 408, 465
OliI CACNNNNGTG 1 cut(s) 447
PceI AGGCCT 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 329
PkrI GCNGC 5 cut(s) 56, 223, 382, 439, 579
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PshAI GACNNNNGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 258, 550
PsuI RGATCY 3 cut(s) 176, 256, 508
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 3 cut(s) 40, 132, 521
RsaNI GTAC 3 cut(s) 39, 131, 520
RseI CAYNNNNRTG 2 cut(s) 390, 447
SaqAI TTAA 3 cut(s) 335, 401, 537
SatI GCNGC 5 cut(s) 55, 222, 381, 438, 578
Sau3AI GATC 6 cut(s) 18, 176, 209, 256, 508, 526
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 551
SetI ASST 6 cut(s) 106, 112, 157, 195, 401, 458
SfaNI GCATC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 390, 447
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 1 cut(s) 562
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 5 cut(s) 8, 36, 54, 150, 578
SspMI CTAG 1 cut(s) 281
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 184, 517
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 562
TatI WGTACW 2 cut(s) 130, 519
TauI GCSGC 2 cut(s) 57, 580
Tru1I TTAA 3 cut(s) 335, 401, 537
Tru9I TTAA 3 cut(s) 335, 401, 537
TscAI CASTG 2 cut(s) 120, 323
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 221, 380, 437
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 2 cut(s) 120, 323
Tth111I GACNNNGTC 1 cut(s) 329
Vha464I CTTAAG 1 cut(s) 334
XagI CCTNNNNNAGG 2 cut(s) 344, 394
XceI RCATGY 2 cut(s) 408, 465
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 2 cut(s) 410, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.