Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

57408330 .. 57409472

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTCTGACTCTCTCCCAAGAGCAATATCACCGGTTCTTCTATTTGACGAGCGGCGACAAAACTTTTCGCTTGCTTCCCTATTCATATTGCAGCAGTGATAATTCTCTTCTTCCACCTCTCTCATTGGTTAGAGGAGGTGGTTTTGCTGATGTTGGTGGGTTGGGGATAGAAACCCTAGTTGATCAGATCTGGTTTGGTGTTCCTATTAGTAGAGATGATGGATCTGCTCTTGATCCGTGGTTCTATGGTGGCAAGCGACAGAGTGATTGGAAGACTGCTTCGTGGCAGGGCAGCGTTCGACCCTATGGTGAATCTGGGCGAGGCAAATGCTTCGTCTTCTTCTCCATTTCCTTGCAGTCTTCCGACGGTGATAGTGGCACAGCTTTCGGGGATGGAGCAACTGGTATGAGTCTTGGGTTAATGAGGACGGAGTCTTGGGTCTTCGATGGTGGAGGTGGAATTTTGTCTTGGGTTGCTGGCATAGGGAACGTGCTGGTGGCCACCGGTGGCGCTTGGGAAGGAGATAGAGGCTGCATAGAGGTCAGCAGTGGTGGTGACAACTGTGAGGAAGTTGGAGGCCACCACAAAGCTTGGGCGGCGACTGACGTGTGGAAGCTAGGCATTGTGCTCCTAGGGTTTGAAGTGCTACTTTGGTCTATGTTTACATATCATGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.41

Weight (kDa)

4.78

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	54, 599
AclWI	GGATC	2 cut(s)	230, 232
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	609
AgeI	ACCGGT	2 cut(s)	33, 506
AgsI	TTSAA	1 cut(s)	644
AjiI	CACGTC	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	3 cut(s)	386, 593, 619
AluI	AGCT	3 cut(s)	386, 593, 619
Alw21I	GWGCWC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	230, 232
AoxI	GGCC	2 cut(s)	501, 580
ApeKI	GCWGC	3 cut(s)	93, 294, 534
ApoI	RAATTY	1 cut(s)	462
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AsiGI	ACCGGT	2 cut(s)	33, 506
AspA2I	CCTAGG	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	515
AsuHPI	GGTGA	4 cut(s)	23, 323, 383, 569
AvrII	CCTAGG	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	503
BbsI	GAAGAC	4 cut(s)	281, 331, 354, 436
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	105, 306, 521
BccI	CCATC	3 cut(s)	215, 389, 443
BcgI	CGANNNNNNTGC	6 cut(s)	312, 316, 346, 350, 370, 404
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	3 cut(s)	179, 620, 635
BfoI	RGCGCY	1 cut(s)	516
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	5 cut(s)	55, 94, 295, 535, 600
BlnI	CCTAGG	1 cut(s)	634
BlsI	GCNGC	5 cut(s)	56, 95, 296, 536, 601
BmgBI	CACGTC	1 cut(s)	610
BpiI	GAAGAC	4 cut(s)	281, 331, 354, 436
BsaJI	CCNNGG	2 cut(s)	239, 634
BsaWI	WCCGGW	2 cut(s)	33, 506
Bse118I	RCCGGY	2 cut(s)	33, 506
Bse1I	ACTGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	239, 634
BseGI	GGATG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	409
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	3 cut(s)	105, 306, 521
BshFI	GGCC	2 cut(s)	503, 582
BshTI	ACCGGT	2 cut(s)	33, 506
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	34, 507
BsnI	GGCC	2 cut(s)	503, 582
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	184, 189, 224, 235
BspACI	CCGC	2 cut(s)	54, 599
BspANI	GGCC	2 cut(s)	503, 582
BspHI	TCATGA	1 cut(s)	680
BspPI	GGATC	2 cut(s)	230, 232
BsrBI	CCGCTC	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	33, 506
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	2 cut(s)	33, 506
BssECI	CCNNGG	2 cut(s)	239, 634
BssMI	GATC	4 cut(s)	184, 189, 224, 235
BssT1I	CCWWGG	1 cut(s)	634
Bst4CI	ACNGT	2 cut(s)	371, 566
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	74, 257, 481
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	4 cut(s)	187, 192, 227, 238
BstMBI	GATC	4 cut(s)	184, 189, 224, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstV1I	GCAGC	3 cut(s)	105, 306, 521
BstV2I	GAAGAC	4 cut(s)	281, 331, 354, 436
BstX2I	RGATCY	2 cut(s)	189, 224
BstYI	RGATCY	2 cut(s)	189, 224
BsuRI	GGCC	2 cut(s)	503, 582
BtgI	CCRYGG	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	610
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	2 cut(s)	103, 556
BtsIMutI	CAGTG	2 cut(s)	103, 556
Cac8I	GCNNGC	3 cut(s)	74, 257, 481
CciI	TCATGA	1 cut(s)	680
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	2 cut(s)	33, 506
CspAI	ACCGGT	2 cut(s)	33, 506
CspCI	CAANNNNNGTGG	2 cut(s)	575, 610
CviAII	CATG	2 cut(s)	674, 681
CviJI	RGCY	7 cut(s)	5, 386, 503, 534, 582, 593, 619
CviKI_1	RGCY	7 cut(s)	5, 386, 503, 534, 582, 593, 619
DpnI	GATC	4 cut(s)	186, 191, 226, 237
DpnII	GATC	4 cut(s)	184, 189, 224, 235
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	2 cut(s)	677, 684
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FatI	CATG	2 cut(s)	673, 680
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	5 cut(s)	55, 94, 295, 535, 600
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	5 cut(s)	55, 94, 295, 535, 600
FspBI	CTAG	3 cut(s)	179, 620, 635
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	5 cut(s)	55, 94, 295, 535, 600
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	2 cut(s)	503, 582
HapII	CCGG	2 cut(s)	34, 507
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	677, 684
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	4 cut(s)	10, 314, 412, 434
HpaII	CCGG	2 cut(s)	34, 507
HphI	GGTGA	4 cut(s)	23, 323, 383, 569
Hpy166II	GTNNAC	1 cut(s)	666
Hpy188I	TCNGA	3 cut(s)	9, 189, 367
Hpy188III	TCNNGA	2 cut(s)	233, 681
Hpy8I	GTNNAC	1 cut(s)	666
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	2 cut(s)	371, 566
HpyCH4IV	ACGT	2 cut(s)	492, 609
HpyCH4V	TGCA	3 cut(s)	93, 358, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpySE526I	ACGT	2 cut(s)	492, 609
Hsp92II	CATG	2 cut(s)	677, 684
HspAI	GCGC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 189, 224, 235
LmnI	GCTCC	2 cut(s)	398, 636
LpnPI	CCDG	8 cut(s)	47, 178, 275, 303, 390, 465, 482, 520
Lsp1109I	GCAGC	3 cut(s)	105, 306, 521
MaeI	CTAG	3 cut(s)	179, 620, 635
MaeII	ACGT	2 cut(s)	492, 609
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	4 cut(s)	186, 191, 226, 237
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	4 cut(s)	184, 189, 224, 235
MboII	GAAGA	8 cut(s)	31, 101, 104, 286, 331, 334, 354, 436
MflI	RGATCY	2 cut(s)	189, 224
MhlI	GDGCHC	1 cut(s)	633
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	2 cut(s)	103, 462
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	3 cut(s)	4, 421, 443
MmeI	TCCRAC	2 cut(s)	390, 556
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	503
MspI	CCGG	2 cut(s)	34, 507
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	4 cut(s)	184, 189, 224, 235
NlaIII	CATG	2 cut(s)	677, 684
NmuCI	GTSAC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	314
PflFI	GACNNNGTC	1 cut(s)	433
PinAI	ACCGGT	2 cut(s)	33, 506
PkrI	GCNGC	5 cut(s)	56, 95, 296, 536, 601
PleI	GAGTC	3 cut(s)	4, 420, 442
PpsI	GAGTC	3 cut(s)	4, 420, 442
PsuI	RGATCY	2 cut(s)	189, 224
PsyI	GACNNNGTC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	5 cut(s)	55, 94, 295, 535, 600
Sau3AI	GATC	4 cut(s)	184, 189, 224, 235
SchI	GAGTC	3 cut(s)	4, 421, 443
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	9 cut(s)	121, 142, 388, 460, 495, 546, 595, 612, 621
SgrAI	CRCCGGYG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	103, 462
SsiI	CCGC	2 cut(s)	54, 599
SspMI	CTAG	3 cut(s)	179, 620, 635
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	371, 566
TaiI	ACGT	2 cut(s)	495, 612
TaqI	TCGA	2 cut(s)	301, 447
TasI	AATT	2 cut(s)	103, 462
TauI	GCSGC	2 cut(s)	57, 602
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	103, 556
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	3 cut(s)	93, 294, 534
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	75, 669
TspGWI	ACGGA	2 cut(s)	228, 446
TspRI	CASTG	2 cut(s)	103, 556
Tth111I	GACNNNGTC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	462
XmaJI	CCTAGG	1 cut(s)	634
XspI	CTAG	3 cut(s)	179, 620, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.