Rh7CG335100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000783
Physical Location & Seq
Reverse (-)
37309960 .. 37311284
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG335100.1

Sequence Viewer

Length: 444 bp
ATGATGGATCTGCTCTTGATCCGTCGATCAATGGTGGTGGTAGCGACCGGCGCCGGCGGCCAGATTGCTTCTGTTGGAGGTGGTAGTGCTTGGTGGCGGGGCTGTGTGCGTTCTAATGAAGAATCTAGGGGAGCTGATGGCTTCGTCTTCTTCTCCATTTTCTCGTTGTATTCCAATGATGGTAGTGGTGCAGGTTTTAGGGCAGGTGCAGTTGGCTGCCTTTGGTTCATGACGGCAGAGTATATGGTATTCGATAGGGGAGGTGGTACTTTGTCTGGAGGTGGCGACAACTTCTGGTTGGGATCTGATCCCCTTGAAAAAGGGGCAGATGGTGGAGGTGCAGTGATGCATGTGCTGGGTCTTATTGATGATCTTGCTGATTCCGATGGCGTTGGTTATGGCAGGGACAACAAGATTTTCGTTGGTAGCCGAGAGGTAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.28

Weight (kDa)

4.57

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 2 cut(s) 182, 194
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 2 cut(s) 57, 97
AclWI GGATC 4 cut(s) 13, 15, 302, 310
AcoI YGGCCR 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 4 cut(s) 13, 15, 302, 310
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 216
AspLEI GCGC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 203
BccI CCATC 4 cut(s) 131, 173, 323, 380
BceAI ACGGC 1 cut(s) 249
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 54
BfuAI ACCTGC 2 cut(s) 182, 194
BisI GCNGC 2 cut(s) 58, 217
BlsI GCNGC 2 cut(s) 59, 218
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 297
BsaHI GRCGYC 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bse118I RCCGGY 2 cut(s) 47, 53
BseXI GCAGC 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 3 cut(s) 210, 228, 360
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 48, 54
BslFI GGGAC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 6 cut(s) 7, 18, 26, 302, 307, 370
BspACI CCGC 2 cut(s) 57, 97
BspANI GGCC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 2 cut(s) 182, 194
BspPI GGATC 4 cut(s) 13, 15, 302, 310
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 2 cut(s) 47, 53
BssAI RCCGGY 2 cut(s) 47, 53
BssMI GATC 6 cut(s) 7, 18, 26, 302, 307, 370
BssNI GRCGYC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 55
BstEII GGTNACC 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 6 cut(s) 10, 21, 29, 305, 310, 373
BstMBI GATC 6 cut(s) 7, 18, 26, 302, 307, 370
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 50, 57
BstNSI RCATGY 1 cut(s) 353
BstPI GGTNACC 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 7, 302
BstYI RGATCY 2 cut(s) 7, 302
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 2 cut(s) 182, 194
Cac8I GCNNGC 1 cut(s) 55
CciI TCATGA 1 cut(s) 228
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 2 cut(s) 47, 53
Csp6I GTAC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 2 cut(s) 229, 350
CviJI RGCY 6 cut(s) 60, 102, 134, 141, 216, 429
CviKI_1 RGCY 6 cut(s) 60, 102, 134, 141, 216, 429
CviQI GTAC 1 cut(s) 267
DinI GGCGCC 1 cut(s) 52
DpnI GATC 6 cut(s) 9, 20, 28, 304, 309, 372
DpnII GATC 6 cut(s) 7, 18, 26, 302, 307, 370
EaeI YGGCCR 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 351
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaeI CATG 2 cut(s) 232, 353
FaiI YATR 5 cut(s) 230, 243, 245, 351, 399
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 228, 349
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 58, 217
Fsp4HI GCNGC 2 cut(s) 58, 217
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 58, 217
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 297
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 60
HapII CCGG 2 cut(s) 48, 54
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 232, 353
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 2 cut(s) 122, 380
HpaII CCGG 2 cut(s) 48, 54
Hpy188I TCNGA 2 cut(s) 307, 385
Hpy188III TCNNGA 3 cut(s) 16, 229, 276
Hpy99I CGWCG 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 191, 209, 341, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 57
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 232, 353
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 6 cut(s) 7, 18, 26, 302, 307, 370
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 9 cut(s) 61, 67, 74, 177, 189, 261, 280, 341, 388
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 336
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 436
MalI GATC 6 cut(s) 9, 20, 28, 304, 309, 372
MboI GATC 6 cut(s) 7, 18, 26, 302, 307, 370
MboII GAAGA 3 cut(s) 131, 139, 142
MflI RGATCY 2 cut(s) 7, 302
Mly113I GGCGCC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 5 cut(s) 71, 254, 272, 329, 427
Mph1103I ATGCAT 1 cut(s) 351
MreI CGCCGGCG 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 53
MspI CCGG 2 cut(s) 48, 54
MwoI GCNNNNNNNGC 2 cut(s) 50, 57
NaeI GCCGGC 1 cut(s) 55
NarI GGCGCC 1 cut(s) 51
NdeII GATC 6 cut(s) 7, 18, 26, 302, 307, 370
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 232, 353
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 351
NspI RCATGY 1 cut(s) 353
PagI TCATGA 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 122, 380
PkrI GCNGC 2 cut(s) 59, 218
PluTI GGCGCC 1 cut(s) 54
PspEI GGTNACC 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 52
PsuI RGATCY 2 cut(s) 7, 302
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 2 cut(s) 58, 217
Sau3AI GATC 6 cut(s) 7, 18, 26, 302, 307, 370
SetI ASST 9 cut(s) 82, 136, 196, 208, 265, 283, 340, 438, 443
SfaNI GCATC 1 cut(s) 336
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 53
SsiI CCGC 2 cut(s) 57, 97
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 1 cut(s) 126
TaqI TCGA 2 cut(s) 25, 252
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 122, 380
TscAI CASTG 1 cut(s) 348
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 132, 217
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 1 cut(s) 348
XceI RCATGY 1 cut(s) 353
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.