Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Forward (+)

18661501 .. 18662067

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023131

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTCTGACTCTCTATCGGGAGAAATATCATCGTCCCCTTTCTTCGGGAAGCGGTGGTGAAAAAACTTCTCGTTTGCTTCTCTATTCTTATGGCGGCAGCGATAAATCTTTTCGTCTGCCTCTATCTTCGGTTAGGGGAGGCGATTTTGCTGATGTTGGTGGGATTGGGTTTGGAATCATGATCGATCAGATCTGGTTTGGTGGTTCTATTTATAGGGATGATGCATCTGCTCTTGATCTAGCGATTGAGGGTGGCGGTAGCGACCGAAGCGGCAACCAGATTGCTTTTGTTGGAGGTGGTAGGGCTTGGTGGCGGGGTTGTGTGCATCTGAATGAAGATTTTAGGCGAGCTAATGGTTTCGTCTTATTCTCCGTTTTCTCATTGTTTTCCGACAATGGTAGTGGTGCAGGTTTCAAGGCAGGTGCAGTGGGCTGCCTTTGGTTCATGACGGCGGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTGCGTCTGGAGGAGGTGACGGCTTCTGGTTGGAATCTGACCCTCTTATGGGATCAGATGCAGTATATGGATCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

19.83

Weight (kDa)

4.93

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	413
Acc36I	ACCTGC	2 cut(s)	401, 413
AciI	CCGC	6 cut(s)	54, 96, 258, 273, 316, 455
AclWI	GGATC	2 cut(s)	547, 565
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	46, 535, 536
AgsI	TTSAA	1 cut(s)	418
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
AlwI	GGATC	2 cut(s)	547, 565
ApeKI	GCWGC	2 cut(s)	99, 435
AsuHPI	GGTGA	2 cut(s)	71, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	452, 484
BbsI	GAAGAC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	111, 422
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	2 cut(s)	468, 523
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	2 cut(s)	401, 413
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	4 cut(s)	97, 100, 274, 436
BlsI	GCNGC	4 cut(s)	98, 101, 275, 437
BmsI	GCATC	4 cut(s)	214, 236, 337, 535
BpiI	GAAGAC	1 cut(s)	460
BpmI	CTGGAG	1 cut(s)	516
Bsa29I	ATCGAT	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 535, 536
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	46, 535, 536
BseRI	GAGGAG	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	111, 422
BsgI	GTGCAG	2 cut(s)	429, 447
Bsh1285I	CGRYCG	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	46, 535, 536
BsmFI	GGGAC	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
BspACI	CCGC	6 cut(s)	54, 96, 258, 273, 316, 455
BspDI	ATCGAT	1 cut(s)	186
BspHI	TCATGA	2 cut(s)	180, 447
BspMI	ACCTGC	2 cut(s)	401, 413
BspPI	GGATC	2 cut(s)	547, 565
BssMI	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
BstC8I	GCNNGC	1 cut(s)	351
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	6 cut(s)	186, 190, 195, 241, 542, 560
BstMBI	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	111, 422
BstV2I	GAAGAC	1 cut(s)	460
BstX2I	RGATCY	2 cut(s)	192, 557
BstYI	RGATCY	2 cut(s)	192, 557
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	2 cut(s)	401, 413
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	2 cut(s)	180, 447
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	486
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	2 cut(s)	181, 448
CviJI	RGCY	5 cut(s)	5, 308, 353, 435, 510
CviKI_1	RGCY	5 cut(s)	5, 308, 353, 435, 510
CviQI	GTAC	1 cut(s)	486
DpnI	GATC	6 cut(s)	185, 189, 194, 240, 541, 559
DpnII	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
EciI	GGCGGA	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	229
FaeI	CATG	2 cut(s)	184, 451
FaiI	YATR	7 cut(s)	93, 182, 216, 449, 536, 553, 555
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	180, 447
FauI	CCCGC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	97, 100, 274, 436
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	97, 100, 274, 436
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	4 cut(s)	97, 100, 274, 436
GsuI	CTGGAG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	184, 451
HinfI	GANTC	3 cut(s)	10, 177, 521
HphI	GGTGA	2 cut(s)	71, 515
Hpy188I	TCNGA	6 cut(s)	9, 192, 333, 394, 526, 544
Hpy188III	TCNNGA	6 cut(s)	20, 48, 181, 236, 448, 495
HpyCH4V	TGCA	5 cut(s)	227, 328, 410, 428, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
Hsp92II	CATG	2 cut(s)	184, 451
Kzo9I	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
LpnPI	CCDG	7 cut(s)	181, 293, 396, 408, 449, 480, 499
Lsp1109I	GCAGC	2 cut(s)	111, 422
LweI	GCATC	4 cut(s)	214, 236, 337, 535
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	6 cut(s)	185, 189, 194, 240, 541, 559
MboI	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
MboII	GAAGA	4 cut(s)	36, 120, 350, 460
MflI	RGATCY	2 cut(s)	192, 557
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	3 cut(s)	274, 417, 498
MnlI	CCTC	8 cut(s)	132, 134, 244, 290, 473, 491, 494, 540
Mph1103I	ATGCAT	1 cut(s)	229
MslI	CAYNNNNRTG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
NlaIII	CATG	2 cut(s)	184, 451
NmuCI	GTSAC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	229
PagI	TCATGA	2 cut(s)	180, 447
PaqCI	CACCTGC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	177, 521
PkrI	GCNGC	4 cut(s)	98, 101, 275, 437
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	192, 557
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	4 cut(s)	97, 100, 274, 436
Sau3AI	GATC	6 cut(s)	183, 187, 192, 238, 539, 557
SchI	GAGTC	1 cut(s)	4
SetI	ASST	6 cut(s)	301, 355, 415, 427, 484, 505
SfaNI	GCATC	4 cut(s)	214, 236, 337, 535
SmiMI	CAYNNNNRTG	1 cut(s)	333
SsiI	CCGC	6 cut(s)	54, 96, 258, 273, 316, 455
SspMI	CTAG	1 cut(s)	242
TaqI	TCGA	2 cut(s)	186, 471
TaqII	GACCGA	1 cut(s)	282
TauI	GCSGC	2 cut(s)	99, 276
TfiI	GAWTC	2 cut(s)	177, 521
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	99, 435
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	351, 436
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	435
XspI	CTAG	1 cut(s)	242
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.