RLG00000031740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000783
Physical Location & Seq
Forward (+)
7908345 .. 7909886
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031740

Sequence Viewer

Length: 390 bp
ATGACTGGGGACGAATCAGACCGGCAGATCTTGAACTCGATATCGGACAGGCAGGTCTTCAACCTTTGGGCCGACGAGCTCGTCTCCCGCGGCTTCTTCCTCCACCGCACCACCGCCGACCTCAACCTCAACCACCTTGAGTCTTCGTCGCCGTCGGGTTACCCAAGGAAGACCCGGCCAAGATTCGGATCGAGAAACAGATCTGAGTTGTCCCAAAATCCGCCGGAAAGCTACATCTTTTTGCCTCCCACACATGACACATGCAGAATGAGATTGCAAGTATTAAGTGGGATGTCCAGAGGATCAGACTGTGTCCAATATAGAAGTCCTGGATGGGATACAGGCATGGGCAATGAGCATAATATAGAAGATGGCAGGGATCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

6.05

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 80
Acc36I ACCTGC 1 cut(s) 43
AccII CGCG 1 cut(s) 90
AciI CCGC 5 cut(s) 88, 90, 106, 114, 221
AclWI GGATC 4 cut(s) 196, 310, 374, 387
AcoI YGGCCR 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 2 cut(s) 34, 61
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 79, 231
AluI AGCT 2 cut(s) 79, 231
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 4 cut(s) 196, 310, 374, 387
AoxI GGCC 2 cut(s) 69, 176
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 175
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 3 cut(s) 49, 135, 176
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 2 cut(s) 327, 365
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 330
BciVI GTATCC 1 cut(s) 331
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 2 cut(s) 27, 200
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 175, 330
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 175, 330
BmrI ACTGGG 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 3 cut(s) 49, 135, 176
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 88, 164
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 1 cut(s) 187
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 88, 164
BseGI GGATG 2 cut(s) 297, 338
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 71, 178
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 3 cut(s) 22, 175, 224
BslFI GGGAC 2 cut(s) 23, 196
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 88
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 23, 196
BsnI GGCC 2 cut(s) 71, 178
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 5 cut(s) 27, 188, 200, 302, 379
BspACI CCGC 5 cut(s) 88, 90, 106, 114, 221
BspANI GGCC 2 cut(s) 71, 178
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 4 cut(s) 196, 310, 374, 387
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 88, 164
BssMI GATC 5 cut(s) 27, 188, 200, 302, 379
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 88
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 297, 338
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 5 cut(s) 30, 191, 203, 305, 382
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 5 cut(s) 27, 188, 200, 302, 379
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 173, 328
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 3 cut(s) 49, 135, 176
BstX2I RGATCY 3 cut(s) 27, 200, 379
BstYI RGATCY 3 cut(s) 27, 200, 379
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 71, 178
BtgI CCRYGG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 297, 338
BveI ACCTGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 69
Cfr42I CCGCGG 1 cut(s) 91
CviAII CATG 3 cut(s) 254, 261, 346
CviJI RGCY 5 cut(s) 71, 79, 93, 178, 231
CviKI_1 RGCY 5 cut(s) 71, 79, 93, 178, 231
DdeI CTNAG 1 cut(s) 204
DpnI GATC 5 cut(s) 29, 190, 202, 304, 381
DpnII GATC 5 cut(s) 27, 188, 200, 302, 379
DrdI GACNNNNNNGTC 2 cut(s) 53, 80
DseDI GACNNNNNNGTC 2 cut(s) 53, 80
EaeI YGGCCR 1 cut(s) 176
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 79
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 328
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 3 cut(s) 257, 264, 349
FaiI YATR 6 cut(s) 255, 262, 321, 347, 360, 365
FaqI GGGAC 2 cut(s) 23, 196
FatI CATG 3 cut(s) 253, 260, 345
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 2 cut(s) 304, 345
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 71, 178
HapII CCGG 3 cut(s) 22, 175, 224
Hin1II CATG 3 cut(s) 257, 264, 349
HinfI GANTC 3 cut(s) 14, 140, 183
HpaII CCGG 3 cut(s) 22, 175, 224
Hpy188I TCNGA 5 cut(s) 19, 46, 188, 205, 307
Hpy188III TCNNGA 3 cut(s) 31, 192, 297
Hpy99I CGWCG 3 cut(s) 77, 151, 157
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 264, 277
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 3 cut(s) 257, 264, 349
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 5 cut(s) 27, 188, 200, 302, 379
MaeIII GTNAC 1 cut(s) 158
MalI GATC 5 cut(s) 29, 190, 202, 304, 381
MboI GATC 5 cut(s) 27, 188, 200, 302, 379
MboII GAAGA 5 cut(s) 49, 88, 135, 181, 380
MflI RGATCY 3 cut(s) 27, 200, 379
MhlI GDGCHC 1 cut(s) 81
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 5 cut(s) 110, 131, 137, 255, 293
MseI TTAA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 3 cut(s) 22, 175, 224
MspR9I CCNGG 2 cut(s) 175, 330
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 90
NciI CCSGG 1 cut(s) 175
NdeII GATC 5 cut(s) 27, 188, 200, 302, 379
NlaIII CATG 3 cut(s) 257, 264, 349
NlaIV GGNNCC 1 cut(s) 381
NspI RCATGY 1 cut(s) 264
PfeI GAWTC 2 cut(s) 14, 183
PflFI GACNNNGTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 3 cut(s) 27, 200, 379
PsyI GACNNNGTC 1 cut(s) 311
SacI GAGCTC 1 cut(s) 81
SacII CCGCGG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 5 cut(s) 27, 188, 200, 302, 379
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 175, 330
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 57, 66, 81, 123, 129, 138, 233
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 5 cut(s) 88, 90, 106, 114, 221
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 173, 328
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 38, 191
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 2 cut(s) 14, 183
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
Tth111I GACNNNGTC 1 cut(s) 311
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.