Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

27249965 .. 27250974

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCGGTGGATGGATTTGAATGTGGTCAGAACCGACGGGGGACGTCAGGGATGCTTTGTTGGAAAAACCCGATTTAGGGTGTCTAAGGCATGGGTTGCACTTGAGAGAGATATCAGCGGCGGTGGTTTTGGTGGCTGGACTGCGGTGAGGGAGGTCGAAGATGGGGTTCGTGATTGGGCTGCCTTGGCTTCCTGTTGGGCCGACTGTCTTTGGGCTCCTTGTTTTGGGCCCTCCCAGCTAGGGCTTCACAAGGGTGGAGGTGAAAGTGGGCTGGTCTTCAACGGTCTGACAGCAACACAAGTTATGGCTGATGGCGATCAAGAACTATCAATTCCTGAGTCTAACAGTGCATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.82

Weight (kDa)

5.01

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	46
AciI	CCGC	4 cut(s)	4, 117, 120, 143
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	4 cut(s)	75, 76, 224, 240
AgsI	TTSAA	2 cut(s)	19, 280
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
AoxI	GGCC	2 cut(s)	198, 227
ApaI	GGGCCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	3 cut(s)	198, 227, 228
AsuHPI	GGTGA	2 cut(s)	157, 272
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	2 cut(s)	217, 231
BbsI	GAAGAC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	3 cut(s)	4, 155, 305
BfaI	CTAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	118, 180
BlsI	GCNGC	2 cut(s)	119, 181
BmgT120I	GGNCC	3 cut(s)	198, 227, 228
BmiI	GGNNCC	2 cut(s)	216, 229
BmsI	GCATC	1 cut(s)	41
BpiI	GAAGAC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 76, 224, 240
Bse8I	GATNNNNATC	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	15, 56
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	4 cut(s)	75, 76, 224, 240
BseMII	CTCAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	234
BshFI	GGCC	2 cut(s)	200, 229
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	4 cut(s)	75, 76, 224, 240
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	200, 229
Bsp120I	GGGCCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	217, 231
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	4 cut(s)	4, 117, 120, 143
BspANI	GGCC	2 cut(s)	200, 229
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	216, 229
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	206, 284, 347
BstACI	GRCGYC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	84, 336
BstF5I	GGATG	2 cut(s)	15, 56
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 185, 235
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	200, 229
BtsCI	GGATG	2 cut(s)	15, 56
BtsIMutI	CAGTG	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	198, 227, 228
CviAII	CATG	2 cut(s)	90, 355
DdeI	CTNAG	2 cut(s)	84, 336
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	217, 231
Eco32I	GATATC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	217, 231
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	93, 358
FaiI	YATR	3 cut(s)	91, 305, 356
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	89, 354
Fnu4HI	GCNGC	2 cut(s)	118, 180
FokI	GGATG	2 cut(s)	22, 63
FriOI	GRGCYC	2 cut(s)	217, 231
Fsp4HI	GCNGC	2 cut(s)	118, 180
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	2 cut(s)	118, 180
GsaI	CCCAGC	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	200, 229
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	93, 358
HinfI	GANTC	1 cut(s)	338
HphI	GGTGA	2 cut(s)	157, 272
Hpy188I	TCNGA	2 cut(s)	29, 288
Hpy188III	TCNNGA	3 cut(s)	170, 320, 335
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	206, 284, 347
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	98, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 185, 235
HpyF3I	CTNAG	2 cut(s)	84, 336
HpySE526I	ACGT	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	93, 358
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	32, 121, 205, 248, 257, 348
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	43
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	170, 268
MhlI	GDGCHC	2 cut(s)	217, 231
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	141, 145, 241, 251
MslI	CAYNNNNRTG	2 cut(s)	252, 355
MspA1I	CMGCKG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	95, 185, 235
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	93, 358
NlaIV	GGNNCC	2 cut(s)	216, 229
OliI	CACNNNNGTG	1 cut(s)	252
PctI	GAATGC	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	119, 181
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	216, 229
PspOMI	GGGCCC	1 cut(s)	227
PspPI	GGNCC	3 cut(s)	198, 227, 228
RseI	CAYNNNNRTG	2 cut(s)	252, 355
SatI	GCNGC	2 cut(s)	118, 180
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	3 cut(s)	198, 227, 228
SchI	GAGTC	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	217, 231
SetI	ASST	4 cut(s)	46, 156, 240, 262
SfaNI	GCATC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	252, 355
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	4, 117, 120, 143
SspMI	CTAG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	206, 284, 347
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	330
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	352
XspI	CTAG	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.