RLG00000028025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000783
Physical Location & Seq
Reverse (-)
17845256 .. 17847937
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028025

Sequence Viewer

Length: 726 bp
ATGGAGGGTATATCATCCCTTCTTTTGTCCGGCTGGTTCGTGGGCGGCAGTGGTAGGGGTGCTCCCCGGCATGCCTATCTTACTTTTCTATACAGTTTTCTTCGCAGTCCAAGGATCGTGATGGAGGCTGGCTGTTGGTTGACTCCAGCGTTGTCTCGTTTGGGAGATAGTTTGGTGGCGGATGGAATTGATTGTGGAACCAACAGAATTTTCGACACTAGGCATGGGGCTGCACTTGAAAGGGATGCCGGCGGAGGTTTTGGGGTGGAAGACCGGAGATCTACAGTGACGGAGGTCGACGGCGACGTAAGACCGGAGTGGGCTGCCTTGTCTCCTTGCTGGGCAAGCTGCTCCTGGGATCCTTGCTTTGGGCTTTCCGGGCTAGGGTTGACAGGATGGGCTTTGTTCCATGGCTGGAAGTGGTGGGGAACACTGGGAGATACACTTATGGAGCTCAAATCAATCACATTCATTGGTGGCGCTGCCACTACATATGCAAAGGCAAATAGATTGTATGAAAAAGTAATTGAAGAACAAGCAGATTATGAATCACGAGCTAGAAACCATCCTCAGCATCGACAGCCTGAGCAAAGGCCGAAACAACACTACAATTTGTTGTGGATCGTTCATAAGCAGAGCACAAAATTCATTTTAGTGGGTAGAGGTGTATATGCTAATCTGAGAGAGGTTACTCGCAGATTTGACTTAGGACATGCTAACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.86

Weight (kDa)

8.29

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AciI CCGC 3 cut(s) 45, 179, 252
AclWI GGATC 4 cut(s) 122, 353, 366, 629
AcsI RAATTY 2 cut(s) 207, 644
AfiI CCNNNNNNNGG 2 cut(s) 368, 384
AgsI TTSAA 2 cut(s) 239, 530
AjnI CCWGG 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 3 cut(s) 348, 454, 557
AluI AGCT 3 cut(s) 348, 454, 557
Alw21I GWGCWC 3 cut(s) 64, 456, 641
Alw26I GTCTC 2 cut(s) 159, 336
AlwI GGATC 4 cut(s) 122, 353, 366, 629
AoxI GGCC 1 cut(s) 593
ApeKI GCWGC 4 cut(s) 230, 323, 348, 482
ApoI RAATTY 2 cut(s) 207, 644
AspLEI GCGC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 67, 379
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 456
BauI CACGAG 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 3 cut(s) 64, 456, 641
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 4 cut(s) 217, 310, 335, 469
BccI CCATC 4 cut(s) 115, 176, 390, 573
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 355
BcnI CCSGG 2 cut(s) 67, 379
BcoDI GTCTC 2 cut(s) 159, 336
BfaI CTAG 3 cut(s) 219, 383, 558
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 483
BglII AGATCT 1 cut(s) 278
BisI GCNGC 5 cut(s) 46, 231, 324, 349, 483
BlsI GCNGC 5 cut(s) 47, 232, 325, 350, 484
Bme1390I CCNGG 3 cut(s) 67, 355, 379
BmiI GGNNCC 2 cut(s) 199, 360
BmrFI CCNGG 3 cut(s) 67, 355, 379
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 235, 583
BmuI ACTGGG 1 cut(s) 443
BoxI GACNNNNGTC 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 129
Bpu10I CCTNAGC 2 cut(s) 570, 585
BpuMI CCSGG 2 cut(s) 67, 379
BsaJI CCNNGG 4 cut(s) 65, 110, 354, 409
BsaWI WCCGGW 2 cut(s) 273, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 368, 384
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 4 cut(s) 65, 110, 354, 409
BseGI GGATG 5 cut(s) 14, 187, 250, 401, 565
BseLI CCNNNNNNNGG 2 cut(s) 368, 384
BseMII CTCAG 3 cut(s) 576, 584, 671
BseNI ACTGG 1 cut(s) 438
BseXI GCAGC 4 cut(s) 217, 310, 335, 469
BseYI CCCAGC 1 cut(s) 339
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 1 cut(s) 595
BsiHKAI GWGCWC 3 cut(s) 64, 456, 641
BsiSI CCGG 6 cut(s) 30, 67, 249, 274, 314, 378
BslI CCNNNNNNNGG 2 cut(s) 368, 384
BsmAI GTCTC 2 cut(s) 159, 336
BsnI GGCC 1 cut(s) 595
Bsp1286I GDGCHC 3 cut(s) 64, 456, 641
Bsp143I GATC 4 cut(s) 114, 278, 358, 621
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 3 cut(s) 45, 179, 252
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 3 cut(s) 577, 583, 672
BspLI GGNNCC 2 cut(s) 199, 360
BspPI GGATC 4 cut(s) 122, 353, 366, 629
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 4 cut(s) 65, 110, 354, 409
BssMI GATC 4 cut(s) 114, 278, 358, 621
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 110, 409
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 3 cut(s) 95, 286, 722
BstC8I GCNNGC 4 cut(s) 72, 130, 250, 346
BstDEI CTNAG 4 cut(s) 570, 585, 680, 706
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 5 cut(s) 14, 187, 250, 401, 565
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 4 cut(s) 117, 281, 361, 624
BstMAI GTCTC 2 cut(s) 159, 336
BstMBI GATC 4 cut(s) 114, 278, 358, 621
BstMWI GCNNNNNNNGC 3 cut(s) 345, 379, 580
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 2 cut(s) 74, 716
BstPAI GACNNNNGTC 1 cut(s) 293
BstSCI CCNGG 3 cut(s) 65, 353, 377
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 4 cut(s) 217, 310, 335, 469
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 278, 358
BstYI RGATCY 2 cut(s) 278, 358
BsuRI GGCC 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 409
BtsCI GGATG 5 cut(s) 14, 187, 250, 401, 565
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 3 cut(s) 55, 291, 431
Cac8I GCNNGC 4 cut(s) 72, 130, 250, 346
CfoI GCGC 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 248
CviAII CATG 4 cut(s) 71, 224, 410, 713
DdeI CTNAG 4 cut(s) 570, 585, 680, 706
DpnI GATC 4 cut(s) 116, 280, 360, 623
DpnII GATC 4 cut(s) 114, 278, 358, 621
EciI GGCGGA 2 cut(s) 194, 267
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 2 cut(s) 110, 409
Eco24I GRGCYC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 454
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 2 cut(s) 110, 409
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 2 cut(s) 110, 409
FaeI CATG 4 cut(s) 74, 227, 413, 716
FatI CATG 4 cut(s) 70, 223, 409, 712
FauNDI CATATG 1 cut(s) 493
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 5 cut(s) 46, 231, 324, 349, 483
FokI GGATG 4 cut(s) 194, 257, 408, 552
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 5 cut(s) 46, 231, 324, 349, 483
FspBI CTAG 3 cut(s) 219, 383, 558
GlaI GCGC 1 cut(s) 481
GluI GCNGC 5 cut(s) 46, 231, 324, 349, 483
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 1 cut(s) 595
HapII CCGG 6 cut(s) 30, 67, 249, 274, 314, 378
HhaI GCGC 1 cut(s) 482
Hin1II CATG 4 cut(s) 74, 227, 413, 716
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HincII GTYRAC 3 cut(s) 141, 298, 390
HindII GTYRAC 3 cut(s) 141, 298, 390
HinfI GANTC 2 cut(s) 142, 548
HpaII CCGG 6 cut(s) 30, 67, 249, 274, 314, 378
Hpy166II GTNNAC 3 cut(s) 141, 298, 390
Hpy188I TCNGA 1 cut(s) 681
Hpy188III TCNNGA 2 cut(s) 118, 552
Hpy8I GTNNAC 3 cut(s) 141, 298, 390
Hpy99I CGWCG 2 cut(s) 302, 308
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 95, 286, 722
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 2 cut(s) 233, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 379, 580
HpyF3I CTNAG 4 cut(s) 570, 585, 680, 706
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 74, 227, 413, 716
HspAI GCGC 1 cut(s) 480
KroI GCCGGC 1 cut(s) 248
KroNI GCCGGC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 114, 278, 358, 621
LmnI GCTCC 3 cut(s) 67, 356, 451
Lsp1109I GCAGC 4 cut(s) 217, 310, 335, 469
LweI GCATC 2 cut(s) 235, 583
MaeI CTAG 3 cut(s) 219, 383, 558
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 286, 688
MalI GATC 4 cut(s) 116, 280, 360, 623
MboI GATC 4 cut(s) 114, 278, 358, 621
MboII GAAGA 3 cut(s) 92, 281, 542
MflI RGATCY 2 cut(s) 278, 358
MhlI GDGCHC 3 cut(s) 64, 456, 641
MluCI AATT 5 cut(s) 186, 207, 525, 610, 644
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 6 cut(s) 118, 248, 286, 579, 656, 679
MroNI GCCGGC 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 653
MspI CCGG 6 cut(s) 30, 67, 249, 274, 314, 378
MspR9I CCNGG 3 cut(s) 67, 355, 379
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 345, 379, 580
NaeI GCCGGC 1 cut(s) 250
NciI CCSGG 2 cut(s) 67, 379
NcoI CCATGG 1 cut(s) 409
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 114, 278, 358, 621
NgoMIV GCCGGC 1 cut(s) 248
NlaIII CATG 4 cut(s) 74, 227, 413, 716
NlaIV GGNNCC 2 cut(s) 199, 360
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 2 cut(s) 74, 716
PaeI GCATGC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdiI GCCGGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 5 cut(s) 47, 232, 325, 350, 484
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 199, 360
PsuI RGATCY 2 cut(s) 278, 358
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 1 cut(s) 456
SalI GTCGAC 1 cut(s) 296
SatI GCNGC 5 cut(s) 46, 231, 324, 349, 483
Sau3AI GATC 4 cut(s) 114, 278, 358, 621
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 3 cut(s) 67, 355, 379
SduI GDGCHC 3 cut(s) 64, 456, 641
SetI ASST 8 cut(s) 259, 297, 309, 350, 456, 559, 667, 690
SfaNI GCATC 2 cut(s) 235, 583
SfcI CTRYAG 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 653
SphI GCATGC 1 cut(s) 74
Sse9I AATT 5 cut(s) 186, 207, 525, 610, 644
SsiI CCGC 3 cut(s) 45, 179, 252
SspMI CTAG 3 cut(s) 219, 383, 558
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 3 cut(s) 65, 353, 377
StyI CCWWGG 2 cut(s) 110, 409
TaaI ACNGT 3 cut(s) 95, 286, 722
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 213, 297, 577
TasI AATT 5 cut(s) 186, 207, 525, 610, 644
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 548
TscAI CASTG 3 cut(s) 55, 291, 438
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 4 cut(s) 230, 323, 348, 482
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 5 cut(s) 460, 531, 561, 617, 637
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 55, 291, 438
XapI RAATTY 2 cut(s) 207, 644
XceI RCATGY 2 cut(s) 74, 716
XmiI GTMKAC 1 cut(s) 297
XspI CTAG 3 cut(s) 219, 383, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.