Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Forward (+)

5491468 .. 5492183

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGGGGATGTTTTCCCTTCGTTTGTCTGGTTGGTTAGTGGGTGGTGGTGGAGGAGGTGTTCTCCAACGTGCCCATATGTTTTTTCCTTGCGGTTTTATTCTCGATCCAATGGCCGTGCTGGATACTGGTTATTGGCTGCTTCTAAGCAATCTAGGGGTGGATGGTTTTGATTGCAGAATCGACGGGGGTCGTCCGGGCTGGAGTGTTGGTAAGACCCGATCTCAAGTGTCGGAGGCGGCTCTGGAGCGAGAAGTAGTGGTGACGGATTGTGCTGAGCCTTCGTTGTCAGTGCTTGTGCAGAGTTCCGACGCTGGGCATAGGCTGCACTTGGTAGAGGCATTGCTGATTGTTGTTGGGCTCCTTGCTTTGGGCTCCCCGAGTTTGGGCTTCACAGGGGTGGAGGTGAATGTGGGCTGGCATTTGACGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.18

Weight (kDa)

5.15

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 239
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	114
AfiI	CCNNNNNNNGG	4 cut(s)	315, 370, 385, 386
AleI	CACNNNNGTG	1 cut(s)	398
AloI	GAACNNNNNNTCC	2 cut(s)	45, 77
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	139, 325
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	274, 418
AvaI	CYCGRG	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	363, 377
BbvI	GCAGC	2 cut(s)	126, 312
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	101
BciVI	GTATCC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	140, 240, 326
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	3 cut(s)	141, 241, 327
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	362, 376
BmrFI	CCNGG	1 cut(s)	198
BoxI	GACNNNNGTC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
BpmI	CTGGAG	2 cut(s)	223, 266
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 370, 385, 386
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	15, 169
BseLI	CCNNNNNNNGG	4 cut(s)	315, 370, 385, 386
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	126, 312
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	2 cut(s)	311, 320
BshFI	GGCC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	4 cut(s)	315, 370, 385, 386
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	3 cut(s)	76, 363, 377
Bsp143I	GATC	2 cut(s)	106, 221
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	93, 239
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	362, 376
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	106, 221
Bst4CI	ACNGT	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	146, 276
BstF5I	GGATG	2 cut(s)	15, 169
BstKTI	GATC	2 cut(s)	109, 224
BstMBI	GATC	2 cut(s)	106, 221
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	126, 312
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	15, 169
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	419
CseI	GACGC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	146, 276
DpnI	GATC	2 cut(s)	108, 223
DpnII	GATC	2 cut(s)	106, 221
EaeI	YGGCCR	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	363, 377
Eco88I	CYCGRG	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	363, 377
FaiI	YATR	3 cut(s)	78, 80, 321
FauNDI	CATATG	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	140, 240, 326
FokI	GGATG	2 cut(s)	22, 176
FriOI	GRGCYC	2 cut(s)	363, 377
Fsp4HI	GCNGC	3 cut(s)	140, 240, 326
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	3 cut(s)	140, 240, 326
GsaI	CCCAGC	1 cut(s)	318
GsuI	CTGGAG	2 cut(s)	223, 266
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	274, 418
Hpy188I	TCNGA	3 cut(s)	235, 310, 434
Hpy188III	TCNNGA	2 cut(s)	104, 245
Hpy99I	CGWCG	2 cut(s)	188, 314
HpyAV	CCTTC	2 cut(s)	29, 291
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	177, 301, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	146, 276
HpySE526I	ACGT	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	106, 221
LmnI	GCTCC	3 cut(s)	247, 366, 380
LpnPI	CCDG	9 cut(s)	15, 107, 114, 187, 210, 230, 300, 381, 403
Lsp1109I	GCAGC	2 cut(s)	126, 312
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	108, 223
MboI	GATC	2 cut(s)	106, 221
MhlI	GDGCHC	3 cut(s)	76, 363, 377
MmeI	TCCRAC	3 cut(s)	91, 213, 333
MnlI	CCTC	5 cut(s)	47, 50, 229, 331, 397
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	78
NdeII	GATC	2 cut(s)	106, 221
NlaIV	GGNNCC	2 cut(s)	362, 376
NmuCI	GTSAC	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	141, 241, 327
PshAI	GACNNNNGTC	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	362, 376
RseI	CAYNNNNRTG	1 cut(s)	398
SatI	GCNGC	3 cut(s)	140, 240, 326
Sau3AI	GATC	2 cut(s)	106, 221
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	3 cut(s)	76, 363, 377
SetI	ASST	3 cut(s)	61, 73, 408
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SsiI	CCGC	2 cut(s)	93, 239
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	105, 183
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	180
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	139, 325
Tsp45I	GTSAC	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	297
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.