Rh6DG405600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000783
Physical Location & Seq
Reverse (-)
59301570 .. 59302836
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG405600.1

Sequence Viewer

Length: 831 bp
ATGGCTCTGACTCTCTCTCGAGAGGGATATCATCGTTTCTTCCATTCGGTGAGCGGCGGTGAAAAAACTTCTCGCTTGCTTCTCTGTTCTCATGGCGGCGGCGACAAACCTCTTCGTCTGGCTCTATCTTCGGTTACAGAAGATGCTTGTGCTGATTTTGGTGGGATTGGTCCTAGAATCTTGAGTGACCAGATCTGGTCTGGTGGTGATGATGGATCTGCTCTTGATCCGTCGACCTATGGTGGTGATAGCGACCAGCGCGGTGGCACGATGGTTGCTATTGGCGGTGGTGATGTCTGGTGGCGTTCGCTCGACGAGGGTAGGGTGGTCTTGGATGGAGGAGGCGGTACGGTTCGGGCTGATCTCTACCCGATGCGTTCTTCTGGATCGAAGGTGGCTGTGACAACTGCCGGTGGTTTTGAACGCACGGCTGGCTTTCAGCCTTCGCCTGGAGGCGGTGACTGCTTCTGGTTGGGATCTATTCCTCTTGGAGATGAGGGTAGCGACCTACAGATGGTGAAGGAAGGTGATTTGGCCCGATCTGTTTTCGCTGGCGCTGCCGGCGGCTGGGGTGGTAATCGGTTTGGTCGTGGTGGCCTAGCAGTGGTTGTGTGGCCGAGTTTTGCAGCGGCGAGGCAACTCGGAGATGGTGGTGGGGTGCCCTTAGTACTTCTGGGGGTGGCCTTCGTAATTGCCATGTGGGCTGATGCTTGCTGGTGGGCCTGGGCTTGCATAATTTTGGACGGGATGGAAGCCCAAGATTCCATGCGTAAGAAGGGTACTTTTACCGACCTTGAAAGGAAGCCAAGAAGAATCCTAACAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

28.89

Weight (kDa)

5.67

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 261
AclWI GGATC 4 cut(s) 221, 223, 394, 484
AcoI YGGCCR 1 cut(s) 614
AfaI GTAC 3 cut(s) 349, 669, 781
AfiI CCNNNNNNNGG 5 cut(s) 449, 455, 514, 567, 604
AgsI TTSAA 2 cut(s) 422, 797
AjnI CCWGG 2 cut(s) 448, 722
AlwI GGATC 4 cut(s) 221, 223, 394, 484
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 5 cut(s) 534, 595, 614, 681, 720
ApeKI GCWGC 2 cut(s) 557, 626
AspLEI GCGC 2 cut(s) 261, 557
AspS9I GGNCC 3 cut(s) 170, 535, 720
AsuHPI GGTGA 8 cut(s) 61, 71, 218, 257, 302, 470, 529, 539
AvaI CYCGRG 1 cut(s) 18
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 663
BanI GGYRCC 1 cut(s) 658
BbvI GCAGC 2 cut(s) 544, 638
BccI CCATC 6 cut(s) 206, 265, 329, 508, 641, 742
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 2 cut(s) 450, 724
BfaI CTAG 2 cut(s) 174, 599
BfmI CTRYAG 1 cut(s) 509
BfoI RGCGCY 1 cut(s) 558
BglI GCCNNNNNGGC 1 cut(s) 701
BglII AGATCT 1 cut(s) 192
BisI GCNGC 7 cut(s) 55, 97, 100, 558, 565, 627, 630
BlsI GCNGC 7 cut(s) 56, 98, 101, 559, 566, 628, 631
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 2 cut(s) 450, 724
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 3 cut(s) 170, 535, 720
BmiI GGNNCC 1 cut(s) 660
BmrFI CCNGG 2 cut(s) 450, 724
BmsI GCATC 3 cut(s) 133, 363, 697
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 723
Bsc4I CCNNNNNNNGG 5 cut(s) 449, 455, 514, 567, 604
Bse118I RCCGGY 2 cut(s) 410, 560
BseBI CCWGG 2 cut(s) 450, 724
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 2 cut(s) 340, 753
BseLI CCNNNNNNNGG 5 cut(s) 449, 455, 514, 567, 604
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 663
BseXI GCAGC 2 cut(s) 544, 638
BseYI CCCAGC 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 5 cut(s) 536, 597, 616, 683, 722
BshNI GGYRCC 1 cut(s) 658
BsiHKCI CYCGRG 1 cut(s) 18
BsiSI CCGG 2 cut(s) 411, 561
BslI CCNNNNNNNGG 5 cut(s) 449, 455, 514, 567, 604
BsnI GGCC 5 cut(s) 536, 597, 616, 683, 722
BsoBI CYCGRG 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
BspANI GGCC 5 cut(s) 536, 597, 616, 683, 722
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 660
BspPI GGATC 4 cut(s) 221, 223, 394, 484
BspT107I GGYRCC 1 cut(s) 658
BsrBI CCGCTC 1 cut(s) 54
BsrFI RCCGGY 2 cut(s) 410, 560
BssAI RCCGGY 2 cut(s) 410, 560
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
Bst2UI CCWGG 2 cut(s) 450, 724
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 6 cut(s) 77, 433, 553, 562, 712, 730
BstDEI CTNAG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 340, 753
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 2 cut(s) 261, 557
BstKTI GATC 7 cut(s) 195, 218, 229, 364, 389, 479, 542
BstMBI GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
BstMWI GCNNNNNNNGC 6 cut(s) 258, 432, 462, 557, 561, 701
BstNI CCWGG 2 cut(s) 450, 724
BstSCI CCNGG 2 cut(s) 448, 722
BstSFI CTRYAG 1 cut(s) 509
BstSLI GKGCMC 1 cut(s) 663
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 544, 638
BstX2I RGATCY 3 cut(s) 192, 215, 476
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 3 cut(s) 192, 215, 476
BsuRI GGCC 5 cut(s) 536, 597, 616, 683, 722
BtsCI GGATG 2 cut(s) 340, 753
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 609
Cac8I GCNNGC 6 cut(s) 77, 433, 553, 562, 712, 730
CfoI GCGC 2 cut(s) 261, 557
Cfr10I RCCGGY 2 cut(s) 410, 560
Cfr13I GGNCC 3 cut(s) 170, 535, 720
Csp6I GTAC 3 cut(s) 348, 668, 780
CviAII CATG 3 cut(s) 92, 697, 766
CviQI GTAC 3 cut(s) 348, 668, 780
DdeI CTNAG 1 cut(s) 664
DpnI GATC 7 cut(s) 194, 217, 228, 363, 388, 478, 541
DpnII GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 448, 722
EcoRV GATATC 1 cut(s) 29
FaeI CATG 3 cut(s) 95, 700, 769
FaiI YATR 5 cut(s) 93, 240, 698, 734, 767
FatI CATG 3 cut(s) 91, 696, 765
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 7 cut(s) 55, 97, 100, 558, 565, 627, 630
FokI GGATG 2 cut(s) 347, 760
Fsp4HI GCNGC 7 cut(s) 55, 97, 100, 558, 565, 627, 630
FspBI CTAG 2 cut(s) 174, 599
GlaI GCGC 2 cut(s) 260, 556
GluI GCNGC 7 cut(s) 55, 97, 100, 558, 565, 627, 630
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 5 cut(s) 536, 597, 616, 683, 722
HapII CCGG 2 cut(s) 411, 561
HhaI GCGC 2 cut(s) 261, 557
Hin1II CATG 3 cut(s) 95, 700, 769
Hin6I GCGC 2 cut(s) 259, 555
HinP1I GCGC 2 cut(s) 259, 555
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 4 cut(s) 10, 177, 761, 813
HpaII CCGG 2 cut(s) 411, 561
HphI GGTGA 8 cut(s) 61, 71, 218, 257, 302, 470, 529, 539
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 9, 644
Hpy188III TCNNGA 5 cut(s) 18, 20, 181, 224, 384
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 2 cut(s) 235, 317
HpyAV CCTTC 6 cut(s) 385, 453, 514, 518, 694, 769
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 626, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 258, 432, 462, 557, 561, 701
HpyF3I CTNAG 1 cut(s) 664
Hsp92II CATG 3 cut(s) 95, 700, 769
HspAI GCGC 2 cut(s) 259, 555
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Kzo9I GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
Lsp1109I GCAGC 2 cut(s) 544, 638
LweI GCATC 3 cut(s) 133, 363, 697
MaeI CTAG 2 cut(s) 174, 599
MaeIII GTNAC 4 cut(s) 133, 185, 400, 458
MalI GATC 7 cut(s) 194, 217, 228, 363, 388, 478, 541
MbiI CCGCTC 1 cut(s) 54
MboI GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
MboII GAAGA 6 cut(s) 31, 104, 120, 152, 372, 822
MflI RGATCY 3 cut(s) 192, 215, 476
MhlI GDGCHC 1 cut(s) 663
MluCI AATT 2 cut(s) 690, 735
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 9 cut(s) 16, 120, 310, 332, 335, 446, 490, 495, 627
MroNI GCCGGC 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 2 cut(s) 411, 561
MspR9I CCNGG 2 cut(s) 450, 724
MvaI CCWGG 2 cut(s) 450, 724
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 6 cut(s) 258, 432, 462, 557, 561, 701
NaeI GCCGGC 1 cut(s) 562
NdeII GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 3 cut(s) 95, 700, 769
NlaIV GGNNCC 1 cut(s) 660
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 3 cut(s) 185, 400, 458
PaeR7I CTCGAG 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 562
PfeI GAWTC 3 cut(s) 177, 761, 813
PkrI GCNGC 7 cut(s) 56, 98, 101, 559, 566, 628, 631
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 448, 722
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 2 cut(s) 448, 722
PspN4I GGNNCC 1 cut(s) 660
PspPI GGNCC 3 cut(s) 170, 535, 720
PsuI RGATCY 3 cut(s) 192, 215, 476
RsaI GTAC 3 cut(s) 349, 669, 781
RsaNI GTAC 3 cut(s) 348, 668, 780
SalI GTCGAC 1 cut(s) 232
SatI GCNGC 7 cut(s) 55, 97, 100, 558, 565, 627, 630
Sau3AI GATC 7 cut(s) 192, 215, 226, 361, 386, 476, 539
Sau96I GGNCC 3 cut(s) 170, 535, 720
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 450, 724
SduI GDGCHC 1 cut(s) 663
SetI ASST 6 cut(s) 112, 239, 396, 510, 529, 795
SfaNI GCATC 3 cut(s) 133, 363, 697
SfcI CTRYAG 1 cut(s) 509
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 18, 181
SmoI CTYRAG 2 cut(s) 18, 181
Sse9I AATT 2 cut(s) 690, 735
SspMI CTAG 2 cut(s) 174, 599
StyD4I CCNGG 2 cut(s) 448, 722
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 4 cut(s) 19, 233, 312, 389
TasI AATT 2 cut(s) 690, 735
TatI WGTACW 1 cut(s) 667
TauI GCSGC 5 cut(s) 57, 99, 102, 567, 632
TfiI GAWTC 3 cut(s) 177, 761, 813
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 3 cut(s) 185, 400, 458
TseI GCWGC 2 cut(s) 557, 626
Tsp45I GTSAC 3 cut(s) 185, 400, 458
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 609
VpaK11BI GGWCC 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 2 cut(s) 174, 599
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.