RchiOBHm_Chr4g0445321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000783
Physical Location & Seq
Reverse (-)
65795942 .. 65796751
810 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41291

Sequence Viewer

Length: 732 bp
ATGGGTTTAAGTTCGGATACCCTTTGTGACTTTTTCCCTATTCAGAAAGCACTACAACAAAAGTGTGTATTGATAGCATTTAGTGATAGCGTTTTTTTTCTTTCTCAAAATGCTATTAATTTAAGTAATAATAGTTGTGAATCATATCCTGAAAATCCGTATGTCCTCTTAATTCACAAAAACCCTAAGAGAGAGAAATACCGGCGTTTCTTCTCTTCGACGAGCGGCGACGACAAAACTTCTCGCTTACTTCTCTATTCACAAGGCGGCGGCGAGAAACCTCTTCGTCTGCCACTATCTTCGGGTAGAGGAGGCGATTGTGTAGATTTTGGTGGGATTGGGTCCAGCATCTTGATTGATCATATCTGGTTTGGTAGTTCTATTGATAGTGATGATGACTCTGCTCTTGATCCGTCGATCGATGGTGGTGATAGCGACTGGCGCGGTGGCCAGATTATTGCTATTGGAGGTGGTGATGCCTGGAGGAGTTCCAACGATGGTAGTGTGGTCTTCGATGGTGGAGGTGGTATGTCTCGGGCTGATCTATACCCGAGATGGTCTTTTGGTTCGAAGGTGACTGTGGTGACTGCTAGTGGTTTTGAACGTAAGGCTGGAGGCGGCGGCGACGTCTGGGTGGGATCTGTTCCCCTTGGAGAGGAGAGCAGCGTTCTGTTGATGATGATGAATGGTGATTTGGCTCGATCTGTTTTCATTGCCGATGTTGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

25.85

Weight (kDa)

4.67

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 630
AccBSI CCGCTC 1 cut(s) 225
AccII CGCG 1 cut(s) 444
AciI CCGC 6 cut(s) 225, 267, 270, 444, 618, 621
AclWI GGATC 2 cut(s) 404, 646
AcoI YGGCCR 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 627
AfiI CCNNNNNNNGG 1 cut(s) 655
AgsI TTSAA 1 cut(s) 602
AjnI CCWGG 1 cut(s) 479
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 2 cut(s) 404, 646
Ama87I CYCGRG 2 cut(s) 534, 550
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 663
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 5 cut(s) 440, 485, 586, 595, 701
AsuII TTCGAA 1 cut(s) 569
AvaI CYCGRG 2 cut(s) 534, 550
AvaII GGWCC 1 cut(s) 342
BalI TGGCCA 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 675
BccI CCATC 4 cut(s) 416, 491, 509, 549
BciT130I CCWGG 1 cut(s) 481
BciVI GTATCC 1 cut(s) 10
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 2 cut(s) 591, 730
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 6 cut(s) 226, 268, 271, 619, 622, 664
BlsI GCNGC 6 cut(s) 227, 269, 272, 620, 623, 665
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 2 cut(s) 534, 550
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 357, 466
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 2 cut(s) 502, 633
Bpu14I TTCGAA 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMI GCAATG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 3 cut(s) 324, 499, 671
BseXI GCAGC 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 420
BsiHKCI CYCGRG 2 cut(s) 534, 550
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 1 cut(s) 537
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 2 cut(s) 534, 550
Bsp119I TTCGAA 1 cut(s) 569
Bsp143I GATC 6 cut(s) 358, 409, 417, 541, 638, 701
BspACI CCGC 6 cut(s) 225, 267, 270, 444, 618, 621
BspANI GGCC 1 cut(s) 450
BspDI ATCGAT 1 cut(s) 420
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 404, 646
BspT104I TTCGAA 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 6 cut(s) 358, 409, 417, 541, 638, 701
BssNI GRCGYC 1 cut(s) 627
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 220, 288
BstACI GRCGYC 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 569
BstDEI CTNAG 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 653
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 6 cut(s) 361, 412, 420, 544, 641, 704
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 6 cut(s) 358, 409, 417, 541, 638, 701
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstNI CCWGG 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 479
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 675
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 420
CfoI GCGC 1 cut(s) 444
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 420
CviJI RGCY 5 cut(s) 450, 539, 611, 698, 729
CviKI_1 RGCY 5 cut(s) 450, 539, 611, 698, 729
DdeI CTNAG 1 cut(s) 186
DpnI GATC 6 cut(s) 360, 411, 419, 543, 640, 703
DpnII GATC 6 cut(s) 358, 409, 417, 541, 638, 701
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 2 cut(s) 220, 288
EarI CTCTTC 2 cut(s) 220, 288
Eco130I CCWWGG 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 342
Eco88I CYCGRG 2 cut(s) 534, 550
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
FaiI YATR 5 cut(s) 145, 162, 363, 530, 547
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 6 cut(s) 226, 268, 271, 619, 622, 664
Fsp4HI GCNGC 6 cut(s) 226, 268, 271, 619, 622, 664
FspBI CTAG 2 cut(s) 591, 730
GlaI GCGC 1 cut(s) 443
GluI GCNGC 6 cut(s) 226, 268, 271, 619, 622, 664
GsuI CTGGAG 2 cut(s) 502, 633
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 202
HhaI GCGC 1 cut(s) 444
Hin1I GRCGYC 1 cut(s) 627
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HinfI GANTC 2 cut(s) 140, 398
HpaII CCGG 1 cut(s) 202
HphI GGTGA 5 cut(s) 440, 485, 586, 595, 701
Hpy188I TCNGA 2 cut(s) 16, 45
Hpy188III TCNNGA 3 cut(s) 149, 352, 407
Hpy99I CGWCG 4 cut(s) 223, 233, 418, 629
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 604, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 2 cut(s) 604, 627
Hsp92I GRCGYC 1 cut(s) 627
HspAI GCGC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 6 cut(s) 358, 409, 417, 541, 638, 701
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 2 cut(s) 357, 466
MaeI CTAG 2 cut(s) 591, 730
MaeII ACGT 2 cut(s) 604, 627
MaeIII GTNAC 3 cut(s) 26, 574, 583
MalI GATC 6 cut(s) 360, 411, 419, 543, 640, 703
MbiI CCGCTC 1 cut(s) 225
MboI GATC 6 cut(s) 358, 409, 417, 541, 638, 701
MboII GAAGA 5 cut(s) 202, 207, 275, 291, 502
MflI RGATCY 1 cut(s) 638
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 2 cut(s) 118, 171
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 516
MnlI CCTC 9 cut(s) 176, 291, 302, 305, 461, 477, 515, 608, 649
Mox20I TGGCCA 1 cut(s) 450
MscI TGGCCA 1 cut(s) 450
MseI TTAA 4 cut(s) 8, 117, 122, 170
Msp20I TGGCCA 1 cut(s) 450
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 481
MvaI CCWGG 1 cut(s) 481
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 441
NdeII GATC 6 cut(s) 358, 409, 417, 541, 638, 701
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 3 cut(s) 26, 574, 583
NspV TTCGAA 1 cut(s) 569
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 6 cut(s) 227, 269, 272, 620, 623, 665
Ple19I CGATCG 1 cut(s) 420
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PshBI ATTAAT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 1 cut(s) 638
PvuI CGATCG 1 cut(s) 420
SaqAI TTAA 4 cut(s) 8, 117, 122, 170
SatI GCNGC 6 cut(s) 226, 268, 271, 619, 622, 664
Sau3AI GATC 6 cut(s) 358, 409, 417, 541, 638, 701
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 1 cut(s) 481
SetI ASST 6 cut(s) 283, 472, 526, 576, 607, 630
SfaNI GCATC 2 cut(s) 357, 466
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 1 cut(s) 342
Sse9I AATT 2 cut(s) 118, 171
SsiI CCGC 6 cut(s) 225, 267, 270, 444, 618, 621
SspMI CTAG 2 cut(s) 591, 730
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 607, 630
TaqI TCGA 6 cut(s) 218, 416, 420, 513, 569, 700
TasI AATT 2 cut(s) 118, 171
TauI GCSGC 5 cut(s) 228, 270, 273, 621, 624
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 4 cut(s) 8, 117, 122, 170
Tru9I TTAA 4 cut(s) 8, 117, 122, 170
TseFI GTSAC 3 cut(s) 26, 574, 583
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 3 cut(s) 26, 574, 583
TspDTI ATGAA 2 cut(s) 698, 700
TspGWI ACGGA 2 cut(s) 147, 402
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 653
XspI CTAG 2 cut(s) 591, 730
ZraI GACGTC 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.