Rh5CG242700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000783
Physical Location & Seq
Reverse (-)
25178459 .. 25179285
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG242700.1

Sequence Viewer

Length: 441 bp
ATGCTGGTCATTGGCTGCTTCCGATGTCGTTCAGTGGGGGAGACAATCTGGTGGTGGATGATTTTGATTGTGGAGCTAACGGGGGTCGTCGGGGCTGGTAAGACCCGATATCGGGTGTCGAAGGCGACTTCGGAGCGAGGAGCGGTGGTGACGGATTGTGCTGAGACTCTATCATCGATGCTTGCAGAGTACCGGCGCTGGGCACGGGCTGCACTTGGTAGAGGCACCGGTGTCGGTGCTGGCTTTGGTGGTTGGAACTCTGAGATGAGGGAGATCGGCAATGGCGTCCGAGCTGATTGCGCTACCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCCTTGCTTTGGGCTCCCCGAGGTTGGGCCTCACAGGGGTGGAGGTGAATATGGGTTGGCATTTGACAGTCTGACAGGTTGGGCTATCTGGGATTCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.76

Weight (kDa)

6.56

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 8 cut(s) 111, 112, 199, 318, 347, 362, 363, 374
AgeI ACCGGT 1 cut(s) 227
AleI CACNNNNGTG 1 cut(s) 375
AluBI AGCT 2 cut(s) 76, 293
AluI AGCT 2 cut(s) 76, 293
Alw26I GTCTC 2 cut(s) 35, 158
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 2 cut(s) 15, 209
AsiGI ACCGGT 1 cut(s) 227
AspLEI GCGC 2 cut(s) 198, 302
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 160, 395
AvaI CYCGRG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 224
BanII GRGCYC 2 cut(s) 340, 354
BbvI GCAGC 2 cut(s) 2, 196
BcgI CGANNNNNNTGC 4 cut(s) 214, 248, 279, 313
BcoDI GTCTC 2 cut(s) 35, 158
BfaI CTAG 1 cut(s) 439
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 2 cut(s) 16, 210
BlsI GCNGC 2 cut(s) 17, 211
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 3 cut(s) 226, 339, 353
BmsI GCATC 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 8 cut(s) 111, 112, 199, 318, 347, 362, 363, 374
Bse118I RCCGGY 2 cut(s) 192, 227
Bse3DI GCAATG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 8 cut(s) 111, 112, 199, 318, 347, 362, 363, 374
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 153, 252
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 2, 196
BseYI CCCAGC 2 cut(s) 198, 318
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 2 cut(s) 193, 228
BslI CCNNNNNNNGG 8 cut(s) 111, 112, 199, 318, 347, 362, 363, 374
BsmAI GTCTC 2 cut(s) 35, 158
BsnI GGCC 1 cut(s) 367
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 3 cut(s) 205, 340, 354
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 154, 253
BspDI ATCGAT 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 226, 339, 353
BspT107I GGYRCC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 2 cut(s) 192, 227
BssAI RCCGGY 2 cut(s) 192, 227
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 273
BssNI GRCGYC 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 329, 407
BstACI GRCGYC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 183, 241
BstDEI CTNAG 2 cut(s) 162, 261
BstF5I GGATG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 2 cut(s) 198, 302
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 2 cut(s) 35, 158
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 209, 299
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 2, 196
Bsu15I ATCGAT 1 cut(s) 176
BsuRI GGCC 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 176
BtsCI GGATG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 183, 241
CfoI GCGC 2 cut(s) 198, 302
Cfr10I RCCGGY 2 cut(s) 192, 227
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 176
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 1 cut(s) 227
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 162, 261
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco24I GRGCYC 2 cut(s) 340, 354
Eco32I GATATC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 356
EcoRV GATATC 1 cut(s) 110
EcoT38I GRGCYC 2 cut(s) 340, 354
FaiI YATR 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 16, 210
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 2 cut(s) 340, 354
Fsp4HI GCNGC 2 cut(s) 16, 210
FspBI CTAG 1 cut(s) 439
GlaI GCGC 2 cut(s) 197, 301
GluI GCNGC 2 cut(s) 16, 210
GsaI CCCAGC 2 cut(s) 202, 322
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 193, 228
HgaI GACGC 1 cut(s) 274
HhaI GCGC 2 cut(s) 198, 302
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 2 cut(s) 196, 300
HinP1I GCGC 2 cut(s) 196, 300
HinfI GANTC 2 cut(s) 166, 431
HpaII CCGG 2 cut(s) 193, 228
HphI GGTGA 2 cut(s) 160, 395
Hpy188I TCNGA 5 cut(s) 23, 133, 262, 290, 411
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 329, 407
HpyCH4V TGCA 2 cut(s) 185, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 299
HpyF3I CTNAG 2 cut(s) 162, 261
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 2 cut(s) 196, 300
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 5 cut(s) 73, 133, 140, 343, 357
Lsp1109I GCAGC 2 cut(s) 2, 196
LweI GCATC 1 cut(s) 168
MaeI CTAG 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 275
MbiI CCGCTC 1 cut(s) 143
MboI GATC 1 cut(s) 273
MhlI GDGCHC 3 cut(s) 205, 340, 354
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 7 cut(s) 131, 215, 261, 322, 352, 374, 378
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 2 cut(s) 193, 228
MwoI GCNNNNNNNGC 2 cut(s) 209, 299
NdeII GATC 1 cut(s) 273
NlaIV GGNNCC 3 cut(s) 226, 339, 353
NmuCI GTSAC 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 227
PkrI GCNGC 2 cut(s) 17, 211
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PspFI CCCAGC 2 cut(s) 198, 318
PspN4I GGNNCC 3 cut(s) 226, 339, 353
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 375
SatI GCNGC 2 cut(s) 16, 210
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 160
SduI GDGCHC 3 cut(s) 205, 340, 354
SetI ASST 6 cut(s) 78, 295, 308, 363, 385, 418
SfaNI GCATC 1 cut(s) 168
SgrAI CRCCGGYG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 375
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 329, 407
TaqI TCGA 2 cut(s) 119, 176
TfiI GAWTC 1 cut(s) 431
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 15, 209
Tsp45I GTSAC 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 1 cut(s) 39
XspI CTAG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.