RLG00000013197

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000783
Physical Location & Seq
Reverse (-)
27504618 .. 27505860
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013197

Sequence Viewer

Length: 528 bp
ATGTCTTCCCTTCGTTTATCTGGTTGGTTTGTGGGCGGTGGTGGCAGGGGTGTTCTCCAGCATGCCCATCAGTGTTTTCCTTGCAGTTTTATTCTCGGTCCAATGGCCGTGCTGGATACTGGTCATTGGCTGCTTCCGATGTCGTCCCGTGGGGGAGACAATCTGGTGGTGGATGGTGTTGATTGTAGAACCGATGGGGGTCGTCGGGGTTGGAAGGGTGAGTTCCGGCGCTGGGCATGGGCTGCTCTTGGTAGAGGCATCGGTGCCGGTGCTAGCGTTGGTGGCTGGAACTCTGAGATGAGGGAGATCGGCGATGGTGTCCGAGCTGATTGGGCTGCCTTGTCCTCCTGCGGGGCTGACTATTGTTGGGCTCCTTGCTTTGGGCTCCCTGAGTTTGGACTTCGCAGGGGTAGAGGTGACTGTGGGCTGGCCTTTGAGGGTCTTATAGGTTGGGCTGTCTGGGATTCCAACTGGGTTGTGGGCTGCTTTTGGCTGGACTGGGGCTCTAGGGGCCATAGTACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.87

Weight (kDa)

6.87

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 2 cut(s) 36, 351
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 4 cut(s) 232, 351, 380, 395
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 3 cut(s) 105, 429, 511
ApeKI GCWGC 4 cut(s) 130, 242, 335, 483
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 98, 511
AsuHPI GGTGA 2 cut(s) 230, 428
AsuNHI GCTAGC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 3 cut(s) 373, 387, 506
BbvI GCAGC 4 cut(s) 117, 229, 322, 470
BccI CCATC 4 cut(s) 75, 167, 188, 308
BceAI ACGGC 1 cut(s) 92
BciVI GTATCC 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 273, 507
BfoI RGCGCY 1 cut(s) 232
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 4 cut(s) 131, 243, 336, 484
BlsI GCNGC 4 cut(s) 132, 244, 337, 485
BmcAI AGTACT 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 511
BmiI GGNNCC 4 cut(s) 265, 372, 386, 512
BmrI ACTGGG 2 cut(s) 481, 508
BmsI GCATC 1 cut(s) 267
BmtI GCTAGC 1 cut(s) 276
BmuI ACTGGG 2 cut(s) 481, 508
BpmI CTGGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 351, 380, 395
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 3 cut(s) 124, 476, 503
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 4 cut(s) 232, 351, 380, 395
BseMII CTCAG 2 cut(s) 285, 381
BseNI ACTGG 3 cut(s) 124, 476, 503
BseXI GCAGC 4 cut(s) 117, 229, 322, 470
BseYI CCCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 107, 431, 513
BshNI GGYRCC 1 cut(s) 263
BsiSI CCGG 2 cut(s) 226, 267
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 4 cut(s) 232, 351, 380, 395
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 3 cut(s) 107, 431, 513
Bsp1286I GDGCHC 3 cut(s) 373, 387, 506
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 2 cut(s) 36, 351
BspANI GGCC 3 cut(s) 107, 431, 513
BspCNI CTCAG 2 cut(s) 286, 382
BspLI GGNNCC 4 cut(s) 265, 372, 386, 512
BspOI GCTAGC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 3 cut(s) 124, 476, 503
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 63, 274, 429
BstDEI CTNAG 2 cut(s) 294, 390
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 5 cut(s) 42, 242, 282, 332, 510
BstNSI RCATGY 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 117, 229, 322, 470
BsuI GTATCC 1 cut(s) 109
BsuRI GGCC 3 cut(s) 107, 431, 513
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 63, 274, 429
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 98, 511
Csp6I GTAC 1 cut(s) 519
CviAII CATG 2 cut(s) 62, 237
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 294, 390
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 105
Eco24I GRGCYC 3 cut(s) 373, 387, 506
Eco47I GGWCC 1 cut(s) 98
EcoT38I GRGCYC 3 cut(s) 373, 387, 506
FaeI CATG 2 cut(s) 65, 240
FaiI YATR 4 cut(s) 63, 238, 446, 516
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 61, 236
FauI CCCGC 1 cut(s) 344
Fnu4HI GCNGC 4 cut(s) 131, 243, 336, 484
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 3 cut(s) 373, 387, 506
Fsp4HI GCNGC 4 cut(s) 131, 243, 336, 484
FspBI CTAG 2 cut(s) 273, 507
GlaI GCGC 1 cut(s) 230
GluI GCNGC 4 cut(s) 131, 243, 336, 484
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 3 cut(s) 107, 431, 513
HapII CCGG 2 cut(s) 226, 267
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 65, 240
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 464
HpaII CCGG 2 cut(s) 226, 267
HphI GGTGA 2 cut(s) 230, 428
Hpy188I TCNGA 3 cut(s) 138, 295, 323
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 20, 208
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 242, 282, 332, 510
HpyF3I CTNAG 2 cut(s) 294, 390
Hsp92II CATG 2 cut(s) 65, 240
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 376, 390
Lsp1109I GCAGC 4 cut(s) 117, 229, 322, 470
LweI GCATC 1 cut(s) 267
MaeI CTAG 2 cut(s) 273, 507
MaeIII GTNAC 1 cut(s) 416
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MhlI GDGCHC 3 cut(s) 373, 387, 506
MmeI TCCRAC 2 cut(s) 191, 492
MnlI CCTC 5 cut(s) 248, 294, 355, 407, 430
MseI TTAA 1 cut(s) 526
MspI CCGG 2 cut(s) 226, 267
MwoI GCNNNNNNNGC 5 cut(s) 42, 242, 282, 332, 510
NdeII GATC 1 cut(s) 306
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 2 cut(s) 65, 240
NlaIV GGNNCC 4 cut(s) 265, 372, 386, 512
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 65
PaeI GCATGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 4 cut(s) 132, 244, 337, 485
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 4 cut(s) 265, 372, 386, 512
PspPI GGNCC 2 cut(s) 98, 511
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SaqAI TTAA 1 cut(s) 526
SatI GCNGC 4 cut(s) 131, 243, 336, 484
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 98, 511
ScaI AGTACT 1 cut(s) 520
SduI GDGCHC 3 cut(s) 373, 387, 506
SetI ASST 3 cut(s) 328, 418, 451
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 98
SphI GCATGC 1 cut(s) 65
SsiI CCGC 2 cut(s) 36, 351
SspMI CTAG 2 cut(s) 273, 507
TaaI ACNGT 1 cut(s) 422
TaqII GACCGA 1 cut(s) 86
TatI WGTACW 1 cut(s) 518
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 526
Tru9I TTAA 1 cut(s) 526
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 4 cut(s) 130, 242, 335, 483
Tsp45I GTSAC 1 cut(s) 416
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XspI CTAG 2 cut(s) 273, 507
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.