Rh5DG208000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
23086251 .. 23087956
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG208000.1

Sequence Viewer

Length: 411 bp
ATGAAGCCTCTTAACTTGGTGTATTTTCATGTGACACCAGTTAATGATTCTGTCTTTCACCAAACAAATTTTTATTCAAAATTGGTTCCGTTGCCCAAACATCTTATAAATACCTCTACAACCTTCCTTTCGAATACATATATTAGTATCGTTCTTTCATTGGGAATGGTTGCTGATTTGGATTTTATATATGGAGAAACTTTTAGTTTTAGGGTGAAGAGAACGGGGAAAATGAAAGAGAGGCGGAACTGGAAAGGATGGAAAAAGAGAACAAATCGTAGTCCAAGGAACTTATTCCTTTGTAGAAATGGATGGTATGGGAAACACTGTAGCACGAGGGAGTGCGAGAAGAGTCAATCTTTTCTGGCTTCTTTTGCAACTTCCAACCTATCCGGTGATATCTTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.78

Weight (kDa)

10.02

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AciI CCGC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 67
AgsI TTSAA 1 cut(s) 78
ApoI RAATTY 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 293
AsuHPI GGTGA 3 cut(s) 50, 226, 407
AsuII TTCGAA 1 cut(s) 131
BauI CACGAG 1 cut(s) 334
BccI CCATC 2 cut(s) 252, 306
BfmI CTRYAG 1 cut(s) 328
BmiI GGNNCC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 38, 254
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 263, 317
BseNI ACTGG 2 cut(s) 38, 254
BsiSI CCGG 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 131
BspACI CCGC 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 131
BsrI ACTGG 2 cut(s) 38, 254
BssECI CCNNGG 1 cut(s) 284
BssSI CACGAG 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 2 cut(s) 212, 344
BstBI TTCGAA 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 2 cut(s) 263, 317
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 263, 317
BtsIMutI CAGTG 1 cut(s) 325
CviAII CATG 1 cut(s) 29
CviJI RGCY 2 cut(s) 7, 368
CviKI_1 RGCY 2 cut(s) 7, 368
DdeI CTNAG 1 cut(s) 403
Eam1104I CTCTTC 2 cut(s) 212, 344
EarI CTCTTC 2 cut(s) 212, 344
EciI GGCGGA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 284
Eco32I GATATC 1 cut(s) 400
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 1 cut(s) 32
FaiI YATR 8 cut(s) 30, 107, 139, 141, 188, 190, 192, 318
FatI CATG 1 cut(s) 28
FokI GGATG 2 cut(s) 270, 324
HapII CCGG 1 cut(s) 393
Hin1II CATG 1 cut(s) 32
HinfI GANTC 2 cut(s) 47, 352
HpaII CCGG 1 cut(s) 393
HphI GGTGA 3 cut(s) 50, 226, 407
Hpy188I TCNGA 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 1 cut(s) 403
Hsp92II CATG 1 cut(s) 32
LpnPI CCDG 4 cut(s) 51, 235, 350, 406
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 2 cut(s) 229, 361
MluCI AATT 2 cut(s) 67, 80
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 4 cut(s) 18, 124, 234, 330
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 2 cut(s) 12, 42
MspI CCGG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 47
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PsiI TTATAA 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 12, 42
SchI GAGTC 1 cut(s) 361
SetI ASST 3 cut(s) 116, 125, 390
SfcI CTRYAG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 131
Sse9I AATT 2 cut(s) 67, 80
SsiI CCGC 1 cut(s) 244
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 67, 80
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 12, 42
Tru9I TTAA 2 cut(s) 12, 42
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 4 cut(s) 17, 17, 147, 248
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 332
XapI RAATTY 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.