Rh2BG685200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000783
Physical Location & Seq
Reverse (-)
89305824 .. 89313880
8057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG685200.1

Sequence Viewer

Length: 993 bp
ATGATCGATCAGATCTGGTTTGGTGGTCCTGGTGATGATGGATCTGCTCTTGATCCGTTGATTGATAGTGGTGTTAGCGACCGACGCGGCGGCCAGATTGCTTCTGTTGGAGGTGGTAGGGCTTGGTGGCGGGGTTGTGTGCATCTGAATGAAGAATCTAGGCAAGCTTCTGGCTTCGTCTTATTCTTCTTTTTTTCCGACGATGGTAGTGGTGTAGATTTCGGGGCAGGTGCAGTGGGCTGCCTTTGGTTCATGACGGCGGAGGATTTGATCTTCGATGGTGGGGGCGGTACTTTGTCCGGAGGCGGCGAAGGCTTCTGGTTGAAATCTGACCCCCTTGAAAATGGAGTAGAAGGTGGAGGTGCAGTGATGCTACTGGCTGTACTTGAAAGGGATGTCGGCGGAGGTTCTGGGGTGGAAGATTGGAGATCTACGGTGACGGAGGTCAACGGCGACTTACGATCTGAGTGGGCTGCCTTGTCTCCTTGCTGGGCAGATTGCTTCTGGGATCCTTGCTTTGGGCTTTCTGGGCTAGGGTTGACAGGATGGGCTTTGTCCCATGACTGGCAGTGGGTAGACTGGGTCTTAAGCCTGTTCAAGGCCTGGTCTGTCTTTGGAATGGGGGTGGAGGCTGCACACTCCTATGCGAGGTTAACATGCATACCGAATGAGTTCTTTATTATTTCGGCTGCACACTCTTGTGCGAGGTCAACATGCATACCGAATGAGTTATGCTATGCACTTACGAATTGTCATCGACCATCTCAAAGAATTGCTGGTAGTGTCTTGCGAGTTCAGGCTTTAAGAATGCATGGCAACCTTTTCCTTCTCTTTCATGTCTTCTATCTTTGTGGAATGGTGAAGAAGAGTTGGGACTCCCTCAACGAGTATTCAGATCCGACGGTGTACAATGATCATCTTGTTAACAGAGTGGGCTCCATGAAGAGTAATTTCCGACAATCGCCGCTGATACCGGCTTCACCATTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

35.81

Weight (kDa)

4.81

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AccI GTMKAC 1 cut(s) 576
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 299
AciI CCGC 8 cut(s) 87, 90, 130, 260, 288, 306, 402, 965
AclWI GGATC 5 cut(s) 47, 49, 503, 516, 890
AcoI YGGCCR 1 cut(s) 91
AfaI GTAC 3 cut(s) 292, 384, 908
AfiI CCNNNNNNNGG 4 cut(s) 518, 564, 598, 648
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 4 cut(s) 325, 341, 389, 598
AjnI CCWGG 2 cut(s) 28, 602
AleI CACNNNNGTG 1 cut(s) 699
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 5 cut(s) 47, 49, 503, 516, 890
Aor13HI TCCGGA 1 cut(s) 299
AoxI GGCC 2 cut(s) 91, 600
ApeKI GCWGC 4 cut(s) 240, 473, 632, 689
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 26
AsuHPI GGTGA 4 cut(s) 44, 448, 871, 972
AvaII GGWCC 1 cut(s) 26
BamHI GGATCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 938
BbsI GAAGAC 1 cut(s) 832
BbvI GCAGC 4 cut(s) 227, 460, 619, 676
BccI CCATC 5 cut(s) 32, 197, 272, 540, 769
BceAI ACGGC 2 cut(s) 273, 466
BciT130I CCWGG 2 cut(s) 30, 604
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 2 cut(s) 159, 533
BfrI CTTAAG 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 218
BglII AGATCT 2 cut(s) 12, 428
BisI GCNGC 8 cut(s) 88, 91, 241, 307, 474, 633, 690, 965
BlsI GCNGC 8 cut(s) 89, 92, 242, 308, 475, 634, 691, 966
Bme1390I CCNGG 2 cut(s) 30, 604
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 510, 937
BmrFI CCNGG 2 cut(s) 30, 604
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 2 cut(s) 151, 360
BmuI ACTGGG 1 cut(s) 589
BoxI GACNNNNGTC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 832
Bsa29I ATCGAT 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 518, 564, 598, 648
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 3 cut(s) 381, 569, 584
BseAI TCCGGA 1 cut(s) 299
BseBI CCWGG 2 cut(s) 30, 604
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 2 cut(s) 400, 551
BseLI CCNNNNNNNGG 4 cut(s) 518, 564, 598, 648
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 3 cut(s) 381, 569, 584
BseXI GCAGC 4 cut(s) 227, 460, 619, 676
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 4 cut(s) 252, 384, 618, 675
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 2 cut(s) 93, 602
BshVI ATCGAT 1 cut(s) 6
BsiEI CGRYCG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 300, 974
BslFI GGGAC 2 cut(s) 541, 887
BslI CCNNNNNNNGG 4 cut(s) 518, 564, 598, 648
BsmAI GTCTC 1 cut(s) 486
BsmFI GGGAC 2 cut(s) 541, 887
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 2 cut(s) 93, 602
Bsp1286I GDGCHC 1 cut(s) 938
Bsp13I TCCGGA 1 cut(s) 299
Bsp1407I TGTACA 1 cut(s) 906
BspACI CCGC 8 cut(s) 87, 90, 130, 260, 288, 306, 402, 965
BspANI GGCC 2 cut(s) 93, 602
BspCNI CTCAG 1 cut(s) 457
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 299
BspFNI CGCG 1 cut(s) 87
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 510, 937
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 5 cut(s) 47, 49, 503, 516, 890
BspTI CTTAAG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 3 cut(s) 381, 569, 584
BssAI RCCGGY 1 cut(s) 973
Bst2UI CCWGG 2 cut(s) 30, 604
Bst4CI ACNGT 2 cut(s) 436, 904
Bst6I CTCTTC 2 cut(s) 860, 938
BstAFI CTTAAG 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 906
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 465
BstENI CCTNNNNNAGG 2 cut(s) 596, 646
BstF5I GGATG 2 cut(s) 400, 551
BstFNI CGCG 1 cut(s) 87
BstMAI GTCTC 1 cut(s) 486
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 84, 312, 529
BstNI CCWGG 2 cut(s) 30, 604
BstNSI RCATGY 2 cut(s) 660, 717
BstPAI GACNNNNGTC 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 28, 602
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 4 cut(s) 227, 460, 619, 676
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 5 cut(s) 12, 41, 428, 508, 895
BstYI RGATCY 5 cut(s) 12, 41, 428, 508, 895
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 2 cut(s) 93, 602
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 2 cut(s) 400, 551
BtsI GCAGTG 3 cut(s) 240, 372, 575
BtsIMutI CAGTG 3 cut(s) 240, 372, 575
BveI ACCTGC 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 165
CciI TCATGA 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 1 cut(s) 26
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 93
Csp6I GTAC 3 cut(s) 291, 383, 907
CviAII CATG 7 cut(s) 253, 560, 657, 714, 812, 836, 940
CviQI GTAC 3 cut(s) 291, 383, 907
DdeI CTNAG 1 cut(s) 465
EaeI YGGCCR 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 860, 938
EarI CTCTTC 2 cut(s) 860, 938
EciI GGCGGA 2 cut(s) 275, 417
Eco147I AGGCCT 1 cut(s) 602
Eco24I GRGCYC 1 cut(s) 938
Eco47I GGWCC 1 cut(s) 26
EcoNI CCTNNNNNAGG 2 cut(s) 596, 646
EcoRII CCWGG 2 cut(s) 28, 602
EcoT22I ATGCAT 3 cut(s) 662, 719, 813
EcoT38I GRGCYC 1 cut(s) 938
FaeI CATG 7 cut(s) 256, 563, 660, 717, 815, 839, 943
FaqI GGGAC 2 cut(s) 541, 887
FatI CATG 7 cut(s) 252, 559, 656, 713, 811, 835, 939
FauI CCCGC 1 cut(s) 123
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 8 cut(s) 88, 91, 241, 307, 474, 633, 690, 965
FokI GGATG 2 cut(s) 407, 558
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 8 cut(s) 88, 91, 241, 307, 474, 633, 690, 965
FspBI CTAG 2 cut(s) 159, 533
GluI GCNGC 8 cut(s) 88, 91, 241, 307, 474, 633, 690, 965
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 2 cut(s) 93, 602
HapII CCGG 2 cut(s) 300, 974
HgaI GACGC 1 cut(s) 93
Hin1II CATG 7 cut(s) 256, 563, 660, 717, 815, 839, 943
HincII GTYRAC 5 cut(s) 448, 540, 654, 711, 925
HindII GTYRAC 5 cut(s) 448, 540, 654, 711, 925
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 155, 875
HpaI GTTAAC 2 cut(s) 654, 925
HpaII CCGG 2 cut(s) 300, 974
HphI GGTGA 4 cut(s) 44, 448, 871, 972
Hpy166II GTNNAC 7 cut(s) 448, 540, 577, 654, 711, 907, 925
Hpy188I TCNGA 9 cut(s) 12, 147, 199, 331, 466, 895, 900, 956, 992
Hpy188III TCNNGA 3 cut(s) 50, 253, 300
Hpy8I GTNNAC 7 cut(s) 448, 540, 577, 654, 711, 907, 925
Hpy99I CGWCG 3 cut(s) 87, 203, 904
HpyAV CCTTC 3 cut(s) 305, 347, 836
HpyCH4III ACNGT 2 cut(s) 436, 904
HpyCH4V TGCA 9 cut(s) 142, 233, 365, 635, 660, 692, 717, 740, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 312, 529
HpyF3I CTNAG 1 cut(s) 465
Hsp92II CATG 7 cut(s) 256, 563, 660, 717, 815, 839, 943
Kpn2I TCCGGA 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 913
KspAI GTTAAC 2 cut(s) 654, 925
LmnI GCTCC 1 cut(s) 941
Lsp1109I GCAGC 4 cut(s) 227, 460, 619, 676
LweI GCATC 2 cut(s) 151, 360
MaeI CTAG 2 cut(s) 159, 533
MaeIII GTNAC 1 cut(s) 436
MboII GAAGA 8 cut(s) 164, 178, 265, 431, 832, 874, 877, 955
MflI RGATCY 5 cut(s) 12, 41, 428, 508, 895
MhlI GDGCHC 1 cut(s) 938
MluCI AATT 3 cut(s) 748, 771, 949
MlyI GAGTC 1 cut(s) 869
MmeI TCCRAC 4 cut(s) 88, 222, 923, 979
Mph1103I ATGCAT 3 cut(s) 662, 719, 813
MroI TCCGGA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 4 cut(s) 587, 653, 803, 924
MslI CAYNNNNRTG 3 cut(s) 147, 642, 699
MspA1I CMGCKG 1 cut(s) 967
MspCI CTTAAG 1 cut(s) 586
MspI CCGG 2 cut(s) 300, 974
MspR9I CCNGG 2 cut(s) 30, 604
Mva1269I GAATGC 1 cut(s) 813
MvaI CCWGG 2 cut(s) 30, 604
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 84, 312, 529
NlaIII CATG 7 cut(s) 256, 563, 660, 717, 815, 839, 943
NlaIV GGNNCC 2 cut(s) 510, 937
NmuCI GTSAC 1 cut(s) 436
NsiI ATGCAT 3 cut(s) 662, 719, 813
NspI RCATGY 2 cut(s) 660, 717
OliI CACNNNNGTG 1 cut(s) 699
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 218
PceI AGGCCT 1 cut(s) 602
PctI GAATGC 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 1 cut(s) 155
PflFI GACNNNGTC 1 cut(s) 581
PkrI GCNGC 8 cut(s) 89, 92, 242, 308, 475, 634, 691, 966
PleI GAGTC 1 cut(s) 869
PpsI GAGTC 1 cut(s) 869
PshAI GACNNNNGTC 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 28, 602
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 2 cut(s) 28, 602
PspN4I GGNNCC 2 cut(s) 510, 937
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 5 cut(s) 12, 41, 428, 508, 895
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 3 cut(s) 292, 384, 908
RsaNI GTAC 3 cut(s) 291, 383, 907
RseI CAYNNNNRTG 3 cut(s) 147, 642, 699
SaqAI TTAA 4 cut(s) 587, 653, 803, 924
SatI GCNGC 8 cut(s) 88, 91, 241, 307, 474, 633, 690, 965
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 869
ScrFI CCNGG 2 cut(s) 30, 604
SduI GDGCHC 1 cut(s) 938
SfaNI GCATC 2 cut(s) 151, 360
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 3 cut(s) 147, 642, 699
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 3 cut(s) 748, 771, 949
SseBI AGGCCT 1 cut(s) 602
SsiI CCGC 8 cut(s) 87, 90, 130, 260, 288, 306, 402, 965
SspMI CTAG 2 cut(s) 159, 533
StuI AGGCCT 1 cut(s) 602
StyD4I CCNGG 2 cut(s) 28, 602
TaaI ACNGT 2 cut(s) 436, 904
TaqI TCGA 3 cut(s) 6, 276, 757
TaqII GACCGA 1 cut(s) 96
TasI AATT 3 cut(s) 748, 771, 949
TatI WGTACW 2 cut(s) 382, 906
TauI GCSGC 4 cut(s) 90, 93, 309, 967
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 4 cut(s) 587, 653, 803, 924
Tru9I TTAA 4 cut(s) 587, 653, 803, 924
TscAI CASTG 3 cut(s) 240, 372, 575
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 240, 473, 632, 689
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 4 cut(s) 165, 241, 824, 956
TspGWI ACGGA 2 cut(s) 45, 455
TspRI CASTG 3 cut(s) 240, 372, 575
Tth111I GACNNNGTC 1 cut(s) 581
Vha464I CTTAAG 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 26
XagI CCTNNNNNAGG 2 cut(s) 596, 646
XceI RCATGY 2 cut(s) 660, 717
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 159, 533
Zsp2I ATGCAT 3 cut(s) 662, 719, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.