Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

58618905 .. 58619887

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGATGGTAGCGAGTGGCACGGCGGCCAGATTGCTTCTTTTGGAAGTGGCGGGTGATGCTTGGAGGTGGGTCTGTGTGTGTCCGAATAGTGAATTTGGGTGGGCTGACGGCTTAGTTTTCTTCTCCAACTCCCCATTGTACTCCAATGATGGTAGTGGTGCAAATCTCGGGGCAGGTCTAACTGGCTGTCTTTGGCTCATGTTGGCACAGTATCTGGTCTTTAATGGAGGAGGCGGTAGTTTGCCTCGGGCTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAGCAGTGGTTATGGCGGTGGCTGGTGCAGTGCCATCTCTGAGTGTGCGTTGGATCTTGCCAACGATGAAGGTGCTGGGTCGGATGAGGGTTGCAGCGTGGATAACAAACTCTTCGCTGGCGGCTGGGAAACGTTGGTGGAGACTGCTAGGGTTTCTCCAATCTGGGCTTCTTGGGCTTCCAAGTGGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.63

Weight (kDa)

9.49

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	5 cut(s)	26, 53, 237, 299, 404
AclI	AACGTT	1 cut(s)	415
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
Alw26I	GTCTC	2 cut(s)	263, 418
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	217
Ama87I	CYCGRG	2 cut(s)	170, 249
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	16, 68
AvaI	CYCGRG	2 cut(s)	170, 249
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	2 cut(s)	146, 325
BceAI	ACGGC	2 cut(s)	39, 127
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BcoDI	GTCTC	2 cut(s)	263, 418
BfaI	CTAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	27, 378, 405
BlsI	GCNGC	3 cut(s)	28, 379, 406
BmeT110I	CYCGRG	2 cut(s)	170, 249
BmgBI	CACGTC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	389
BseYI	CCCAGC	2 cut(s)	358, 407
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	29
BsiHKCI	CYCGRG	2 cut(s)	170, 249
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	263, 418
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	2 cut(s)	170, 249
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	5 cut(s)	26, 53, 237, 299, 404
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	336
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	115, 323
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	2 cut(s)	263, 418
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 457
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	2 cut(s)	294, 318
BtsIMutI	CAGTG	2 cut(s)	294, 318
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	115, 323
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	2 cut(s)	170, 249
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	203, 296
FatI	CATG	1 cut(s)	201
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	27, 378, 405
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	27, 378, 405
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	3 cut(s)	27, 378, 405
GsaI	CCCAGC	2 cut(s)	362, 411
HaeIII	GGCC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	205
HphI	GGTGA	2 cut(s)	16, 68
Hpy188I	TCNGA	4 cut(s)	87, 324, 366, 476
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	2 cut(s)	269, 415
HpyCH4V	TGCA	3 cut(s)	164, 311, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 457
HpyF3I	CTNAG	2 cut(s)	115, 323
HpySE526I	ACGT	2 cut(s)	269, 415
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	336
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	2 cut(s)	269, 415
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	3 cut(s)	115, 267, 387
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	1 cut(s)	95
MmeI	TCCRAC	3 cut(s)	153, 314, 344
MnlI	CCTC	5 cut(s)	60, 224, 227, 258, 363
MseI	TTAA	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	59, 457
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	205
PflFI	GACNNNGTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	28, 379, 406
Psp1406I	AACGTT	1 cut(s)	415
PspFI	CCCAGC	2 cut(s)	358, 407
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	271
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	27, 378, 405
Sau3AI	GATC	1 cut(s)	336
SetI	ASST	5 cut(s)	71, 181, 272, 357, 418
SfaNI	GCATC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	5 cut(s)	26, 53, 237, 299, 404
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	2 cut(s)	272, 418
TasI	AATT	1 cut(s)	95
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	29, 407
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	294, 318
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	294, 318
Tth111I	GACNNNGTC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	95
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.