RchiOBHm_Chr5g0016061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000783
Physical Location & Seq
Reverse (-)
11111421 .. 11112383
963 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29646

Sequence Viewer

Length: 342 bp
ATGTTGGCGCAGTATCTTGTCTTCGATGGAGGAGGCGATAGTTTGCCTCGGGCTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAGCGGTGGCTATGGCGCTGGCCGGTGCAGTGCCATCTCTGAGTGTGCGTTGGATCTTGCCAACGATGAAGGTGCTGGGTCGGATTGAGGGTTGCGGCGTGGACAATAAACTCTTCGCTGGCGGCTTGGAAACGTTAGTGGAGACTGCTACGGTTTCTCCAATCTGGGCTTCTTGGGCTTCCAAGTGGTCTCTGGGCTTTTTATTTTTTAATTTTTTTTTAATTTTTTGGTTACATTTTTTTTTTTTTTTTTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.49

Weight (kDa)

6.52

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 177, 204
AclI AACGTT 1 cut(s) 215
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 53
AjiI CACGTC 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
Alw26I GTCTC 3 cut(s) 62, 218, 276
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 102
AspLEI GCGC 2 cut(s) 10, 100
AvaI CYCGRG 1 cut(s) 48
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 13, 66
BccI CCATC 2 cut(s) 20, 124
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BcoDI GTCTC 3 cut(s) 62, 218, 276
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 178, 205
BlsI GCNGC 2 cut(s) 179, 206
BmeT110I CYCGRG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 69
BpiI GAAGAC 2 cut(s) 13, 66
BsaI GGTCTC 2 cut(s) 62, 276
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 3 cut(s) 62, 218, 276
BsnI GGCC 1 cut(s) 104
Bso31I GGTCTC 2 cut(s) 62, 276
BsoBI CYCGRG 1 cut(s) 48
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 3 cut(s) 86, 177, 204
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 114
BspPI GGATC 1 cut(s) 143
BspTNI GGTCTC 2 cut(s) 62, 276
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 102, 202
BstDEI CTNAG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 10, 100
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 3 cut(s) 62, 218, 276
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 13, 66
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 104
BtrI CACGTC 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 102, 202
CfoI GCGC 2 cut(s) 10, 100
Cfr10I RCCGGY 1 cut(s) 104
CviJI RGCY 7 cut(s) 53, 92, 104, 207, 251, 260, 279
CviKI_1 RGCY 7 cut(s) 53, 92, 104, 207, 251, 260, 279
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco31I GGTCTC 2 cut(s) 62, 276
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 48
FaiI YATR 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 178, 205
Fsp4HI GCNGC 2 cut(s) 178, 205
GlaI GCGC 2 cut(s) 9, 99
GluI GCNGC 2 cut(s) 178, 205
GsaI CCCAGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 105
HhaI GCGC 2 cut(s) 10, 100
Hin6I GCGC 2 cut(s) 8, 98
HinP1I GCGC 2 cut(s) 8, 98
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 123, 165
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 68, 215
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 2 cut(s) 68, 215
HspAI GCGC 2 cut(s) 8, 98
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 8 cut(s) 39, 86, 96, 118, 143, 186, 232, 260
MaeII ACGT 2 cut(s) 68, 215
MaeIII GTNAC 1 cut(s) 312
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 3 cut(s) 13, 66, 187
MflI RGATCY 1 cut(s) 135
MluCI AATT 2 cut(s) 292, 303
MmeI TCCRAC 2 cut(s) 113, 143
MnlI CCTC 4 cut(s) 23, 26, 57, 163
MseI TTAA 2 cut(s) 291, 302
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 1 cut(s) 135
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 179, 206
Psp1406I AACGTT 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 157
PsuI RGATCY 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 70
SaqAI TTAA 2 cut(s) 291, 302
SatI GCNGC 2 cut(s) 178, 205
Sau3AI GATC 1 cut(s) 135
SetI ASST 3 cut(s) 71, 156, 218
Sse9I AATT 2 cut(s) 292, 303
SsiI CCGC 3 cut(s) 86, 177, 204
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 71, 218
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 292, 303
TauI GCSGC 2 cut(s) 180, 207
Tru1I TTAA 2 cut(s) 291, 302
Tru9I TTAA 2 cut(s) 291, 302
TscAI CASTG 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 164, 325
TspRI CASTG 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.