Rh5DG207900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000783
Physical Location & Seq
Reverse (-)
23072975 .. 23073286
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG207900.1

Sequence Viewer

Length: 312 bp
ATGGTCGTGCTAGATGTTGGTCATTGGCTACTTTCAATGTCGTCCCGCGGGGGAGACAATCTGGTGGTGGATGTTTTTGATTGCGGAACCGACAGGGGTCTTCGGGGCTGGAATGTTGGTAAGACCCGATCTCGAGTGTCGGAGGCGGCTCCGGAGCTAGGAGCGGTGGTAACGGATTGTGCTAAGCCTCCGTCATTGGTGCTTGCAGAGTTCAGGCGTTGGGCATGGGCTTCACTTGATAGAGGCACCGGTGCCGGTGCTGGCTTTGGTGGGTGGAGATCTGAGATGAGGGAGATCGACAATGGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.06

Weight (kDa)

5.73

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccB1I GGYRCC 2 cut(s) 245, 251
AccBSI CCGCTC 1 cut(s) 164
AccII CGCG 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 5 cut(s) 46, 48, 84, 146, 164
AfiI CCNNNNNNNGG 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 1 cut(s) 36
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 151
AsiGI ACCGGT 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 2 cut(s) 245, 251
BbsI GAAGAC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 11, 158
BglII AGATCT 1 cut(s) 278
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 88, 150, 247, 253
BoxI GACNNNNGTC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 2 cut(s) 151, 248
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse118I RCCGGY 2 cut(s) 248, 254
BseAI TCCGGA 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 48
BshNI GGYRCC 2 cut(s) 245, 251
BshTI ACCGGT 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 3 cut(s) 152, 249, 255
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 132
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 3 cut(s) 128, 278, 294
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 5 cut(s) 46, 48, 84, 146, 164
BspCNI CTCAG 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 88, 150, 247, 253
BspT107I GGYRCC 2 cut(s) 245, 251
BsrBI CCGCTC 1 cut(s) 164
BsrFI RCCGGY 2 cut(s) 248, 254
BssAI RCCGGY 2 cut(s) 248, 254
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 128, 278, 294
BstC8I GCNNGC 2 cut(s) 204, 262
BstDEI CTNAG 2 cut(s) 183, 282
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 3 cut(s) 131, 281, 297
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 128, 278, 294
BstPAI GACNNNNGTC 1 cut(s) 96
BstUI CGCG 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 2 cut(s) 204, 262
Cfr10I RCCGGY 2 cut(s) 248, 254
Cfr42I CCGCGG 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 1 cut(s) 225
CviJI RGCY 7 cut(s) 28, 108, 149, 157, 187, 230, 264
CviKI_1 RGCY 7 cut(s) 28, 108, 149, 157, 187, 230, 264
DdeI CTNAG 2 cut(s) 183, 282
DpnI GATC 3 cut(s) 130, 280, 296
DpnII GATC 3 cut(s) 128, 278, 294
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 132
FaeI CATG 1 cut(s) 228
FaiI YATR 1 cut(s) 226
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 224
FauI CCCGC 2 cut(s) 41, 53
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 11, 158
GluI GCNGC 1 cut(s) 147
HapII CCGG 3 cut(s) 152, 249, 255
Hin1II CATG 1 cut(s) 228
HpaII CCGG 3 cut(s) 152, 249, 255
Hpy188I TCNGA 3 cut(s) 142, 283, 311
Hpy188III TCNNGA 2 cut(s) 132, 152
HpyCH4V TGCA 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 183, 282
Hsp92II CATG 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 151
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 3 cut(s) 128, 278, 294
LmnI GCTCC 3 cut(s) 154, 154, 161
LpnPI CCDG 8 cut(s) 47, 79, 94, 165, 199, 246, 262, 268
MaeI CTAG 2 cut(s) 11, 158
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 130, 280, 296
MbiI CCGCTC 1 cut(s) 164
MboI GATC 3 cut(s) 128, 278, 294
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 136, 198, 236, 282
MroI TCCGGA 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 3 cut(s) 152, 249, 255
MvnI CGCG 1 cut(s) 48
NdeII GATC 3 cut(s) 128, 278, 294
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 4 cut(s) 88, 150, 247, 253
PaeR7I CTCGAG 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 88, 150, 247, 253
PsuI RGATCY 1 cut(s) 278
SacII CCGCGG 1 cut(s) 49
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 3 cut(s) 128, 278, 294
SetI ASST 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 248
SgrBI CCGCGG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SsiI CCGC 5 cut(s) 46, 48, 84, 146, 164
SspMI CTAG 2 cut(s) 11, 158
TaqI TCGA 2 cut(s) 133, 297
TauI GCSGC 1 cut(s) 149
TspGWI ACGGA 2 cut(s) 180, 188
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 2 cut(s) 11, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.