RLG00000012102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000783
Physical Location & Seq
Reverse (-)
15252555 .. 15259689
7135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012102

Sequence Viewer

Length: 897 bp
ATGGCTCTGACTCTCTATGGAGAGAAATATCGTTGTTCCCTCTCTTTGGCGAGCGGCGGCGACAAACCTTCTCGTTTGCTTCTCTATTCTTATGGCGGCGGCGATAAATCTTTTCGTCTGCCTCTACCTTTGGTTAGGGGAGGCGATTTGACTGATGTTGGTGGGATTGGGTTTGGAATCATGGTCGATCAGATCTGGTTTGGTGGTTCTGTTTATAGGGATGATGCATCTTCTCTTGATCTGACGATTGATAGTGGTGATTTTAGGCGAGCTGATGGTTTCGTCTTATTCTCCATTTTCTCATTGTTCTCCGACGATGGTAGTGGTGCAGGTTTCAGGGCTGGTGCAGTGGGCTGCCTTTGGTTCATGACGGTAGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTGTGTCTGGAGGAAGCGACGGCTTCTGGTTGGAATCTGACCCCTTTATGGGATCAGATTCGGTATCTGGATCTTGTCAAAGAGCAGTTGCGGACATGGCAGTGTTCAATCGACGCTGTGGGTTGGAGGTCGAAGACTATGCATCCCTTATTCTCTCTTCTCATCACCTTCACAAACATGACTCAAAATGGCGAGCTCGATCAGCAAATCCGTCCTATAACAAACCCAGATCGCCGGATGTCACGTTATCGGATCAACCTCCGGCATTGGAAGCTCTCAATAGCCCTCCTAGGAGGCAAGAAGTCTCGGCGAGTTGCATGCTAGTTAGGACGTTAAGAAAAATCAGACTGAGCTGGCTGAAGAAGCTCAAGCAGTCTTACAAGAACATAGTGAAGGACCTCATGGAAGCCGAAGCGAGCTTCGAAACGTTTCAGCAGAGGCTCTTTAAGGAGACTTCATTTGCAATTCCGATGGGAGTTTTCTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.7

Weight (kDa)

6.44

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 5 cut(s) 54, 57, 96, 99, 497
AclI AACGTT 1 cut(s) 833
AclWI GGATC 3 cut(s) 466, 484, 666
AcuI CTGAAG 1 cut(s) 785
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 3 cut(s) 46, 454, 455
AgsI TTSAA 1 cut(s) 514
AluBI AGCT 6 cut(s) 272, 602, 680, 759, 772, 825
AluI AGCT 6 cut(s) 272, 602, 680, 759, 772, 825
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 715, 851
AlwI GGATC 3 cut(s) 466, 484, 666
ApeKI GCWGC 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 834
AspA2I CCTAGG 1 cut(s) 695
AspS9I GGNCC 1 cut(s) 802
AsuHPI GGTGA 2 cut(s) 269, 563
AsuII TTCGAA 1 cut(s) 828
AvaII GGWCC 1 cut(s) 802
AvrII CCTAGG 1 cut(s) 695
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 371, 403
BbsI GAAGAC 2 cut(s) 379, 546
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 1 cut(s) 341
BccI CCATC 4 cut(s) 269, 311, 386, 871
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 4 cut(s) 527, 561, 706, 740
BcoDI GTCTC 2 cut(s) 715, 851
BfaI CTAG 3 cut(s) 696, 728, 895
BfuAI ACCTGC 1 cut(s) 320
BglII AGATCT 1 cut(s) 192
BisI GCNGC 5 cut(s) 55, 58, 97, 100, 355
BlnI CCTAGG 1 cut(s) 695
BlsI GCNGC 5 cut(s) 56, 59, 98, 101, 356
Bme18I GGWCC 1 cut(s) 802
BmgT120I GGNCC 1 cut(s) 802
BmsI GCATC 3 cut(s) 214, 236, 557
BpiI GAAGAC 2 cut(s) 379, 546
BpmI CTGGAG 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 695
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 454, 455
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 3 cut(s) 226, 548, 649
BseLI CCNNNNNNNGG 3 cut(s) 46, 454, 455
BseMII CTCAG 1 cut(s) 746
BseXI GCAGC 1 cut(s) 341
BsgI GTGCAG 2 cut(s) 348, 366
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 2 cut(s) 641, 668
BslI CCNNNNNNNGG 3 cut(s) 46, 454, 455
BsmAI GTCTC 2 cut(s) 715, 851
Bsp119I TTCGAA 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
BspACI CCGC 5 cut(s) 54, 57, 96, 99, 497
BspCNI CTCAG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 466, 484, 666
BspT104I TTCGAA 1 cut(s) 828
BsrBI CCGCTC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
BssT1I CCWWGG 1 cut(s) 695
Bst4CI ACNGT 2 cut(s) 373, 409
Bst6I CTCTTC 1 cut(s) 568
BstBI TTCGAA 1 cut(s) 828
BstC8I GCNNGC 6 cut(s) 52, 270, 600, 725, 761, 823
BstDEI CTNAG 1 cut(s) 755
BstF5I GGATG 3 cut(s) 226, 548, 649
BstKTI GATC 8 cut(s) 190, 195, 241, 461, 479, 608, 638, 661
BstMAI GTCTC 2 cut(s) 715, 851
BstMBI GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
BstMWI GCNNNNNNNGC 4 cut(s) 503, 608, 677, 769
BstNSI RCATGY 1 cut(s) 727
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 2 cut(s) 379, 546
BstX2I RGATCY 2 cut(s) 192, 476
BstYI RGATCY 2 cut(s) 192, 476
BtsCI GGATG 3 cut(s) 226, 548, 649
BtsI GCAGTG 2 cut(s) 354, 513
BtsIMutI CAGTG 2 cut(s) 354, 513
BveI ACCTGC 1 cut(s) 320
Cac8I GCNNGC 6 cut(s) 52, 270, 600, 725, 761, 823
CciI TCATGA 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 1 cut(s) 528
Csp6I GTAC 1 cut(s) 405
CviAII CATG 6 cut(s) 181, 367, 502, 584, 724, 808
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 1 cut(s) 755
DpnI GATC 8 cut(s) 189, 194, 240, 460, 478, 607, 637, 660
DpnII GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 802
Eco53kI GAGCTC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 602
EcoO109I RGGNCCY 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 695
EcoT22I ATGCAT 2 cut(s) 229, 550
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 6 cut(s) 184, 370, 505, 587, 727, 811
FatI CATG 6 cut(s) 180, 366, 501, 583, 723, 807
Fnu4HI GCNGC 5 cut(s) 55, 58, 97, 100, 355
FokI GGATG 3 cut(s) 233, 535, 656
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 5 cut(s) 55, 58, 97, 100, 355
FspBI CTAG 3 cut(s) 696, 728, 895
GluI GCNGC 5 cut(s) 55, 58, 97, 100, 355
GsuI CTGGAG 1 cut(s) 435
HapII CCGG 2 cut(s) 641, 668
HgaI GACGC 1 cut(s) 528
Hin1II CATG 6 cut(s) 184, 370, 505, 587, 727, 811
HinfI GANTC 5 cut(s) 10, 177, 440, 464, 587
HpaII CCGG 2 cut(s) 641, 668
HphI GGTGA 2 cut(s) 269, 563
Hpy188I TCNGA 9 cut(s) 9, 192, 243, 313, 445, 463, 658, 752, 876
Hpy188III TCNNGA 4 cut(s) 236, 367, 414, 474
Hpy99I CGWCG 3 cut(s) 317, 428, 522
HpyAV CCTTC 3 cut(s) 78, 584, 793
HpyCH4III ACNGT 2 cut(s) 373, 409
HpyCH4IV ACGT 3 cut(s) 650, 737, 833
HpyCH4V TGCA 6 cut(s) 227, 329, 347, 548, 723, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 503, 608, 677, 769
HpyF3I CTNAG 1 cut(s) 755
HpySE526I ACGT 3 cut(s) 650, 737, 833
Hsp92II CATG 6 cut(s) 184, 370, 505, 587, 727, 811
Kzo9I GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 3 cut(s) 214, 236, 557
MaeI CTAG 3 cut(s) 696, 728, 895
MaeII ACGT 3 cut(s) 650, 737, 833
MaeIII GTNAC 1 cut(s) 646
MalI GATC 8 cut(s) 189, 194, 240, 460, 478, 607, 637, 660
MbiI CCGCTC 1 cut(s) 54
MboI GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
MboII GAAGA 5 cut(s) 222, 379, 551, 555, 778
MflI RGATCY 2 cut(s) 192, 476
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 1 cut(s) 870
MlyI GAGTC 2 cut(s) 4, 581
MmeI TCCRAC 3 cut(s) 336, 417, 510
Mph1103I ATGCAT 2 cut(s) 229, 550
MroXI GAANNNNTTC 1 cut(s) 834
MseI TTAA 2 cut(s) 740, 852
MslI CAYNNNNRTG 2 cut(s) 506, 582
MspI CCGG 2 cut(s) 641, 668
MwoI GCNNNNNNNGC 4 cut(s) 503, 608, 677, 769
NdeII GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
NlaIII CATG 6 cut(s) 184, 370, 505, 587, 727, 811
NmeAIII GCCGAG 1 cut(s) 692
NmuCI GTSAC 1 cut(s) 646
NsiI ATGCAT 2 cut(s) 229, 550
NspI RCATGY 1 cut(s) 727
NspV TTCGAA 1 cut(s) 828
PaeI GCATGC 1 cut(s) 727
PagI TCATGA 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 834
PfeI GAWTC 3 cut(s) 177, 440, 464
PkrI GCNGC 5 cut(s) 56, 59, 98, 101, 356
PleI GAGTC 2 cut(s) 4, 581
PpsI GAGTC 2 cut(s) 4, 581
PpuMI RGGWCCY 1 cut(s) 802
Psp124BI GAGCTC 1 cut(s) 604
Psp1406I AACGTT 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 802
PspPI GGNCC 1 cut(s) 802
PspPPI RGGWCCY 1 cut(s) 802
PsuI RGATCY 2 cut(s) 192, 476
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 2 cut(s) 506, 582
SacI GAGCTC 1 cut(s) 604
SaqAI TTAA 2 cut(s) 740, 852
SatI GCNGC 5 cut(s) 55, 58, 97, 100, 355
Sau3AI GATC 8 cut(s) 187, 192, 238, 458, 476, 605, 635, 658
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 2 cut(s) 4, 581
SduI GDGCHC 1 cut(s) 604
SfaNI GCATC 3 cut(s) 214, 236, 557
SfuI TTCGAA 1 cut(s) 828
SinI GGWCC 1 cut(s) 802
SmiMI CAYNNNNRTG 2 cut(s) 506, 582
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 727
Sse9I AATT 1 cut(s) 870
SsiI CCGC 5 cut(s) 54, 57, 96, 99, 497
SspMI CTAG 3 cut(s) 696, 728, 895
SstI GAGCTC 1 cut(s) 604
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 2 cut(s) 373, 409
TaiI ACGT 3 cut(s) 653, 740, 836
TaqI TCGA 6 cut(s) 186, 390, 517, 537, 604, 828
TasI AATT 1 cut(s) 870
TauI GCSGC 4 cut(s) 57, 60, 99, 102
TfiI GAWTC 3 cut(s) 177, 440, 464
Tru1I TTAA 2 cut(s) 740, 852
Tru9I TTAA 2 cut(s) 740, 852
TscAI CASTG 2 cut(s) 354, 513
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 2 cut(s) 355, 852
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 2 cut(s) 354, 513
VpaK11BI GGWCC 1 cut(s) 802
XceI RCATGY 1 cut(s) 727
XmaJI CCTAGG 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 834
XspI CTAG 3 cut(s) 696, 728, 895
Zsp2I ATGCAT 2 cut(s) 229, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.