Rmu_sc0004277.1_g000092

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004277.1
OG0000783
Physical Location & Seq
Reverse (-)
351421 .. 351819
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004277.1_g000092.1.cds

Sequence Viewer

Length: 399 bp
ctgggtcgatcccagcaccagacttcggcgaccagacctgcacttgctcatcacactccgaccagtaggctttttcaacccagacccgatgatctccggtccatttcctacccaaactcgtcgaagaacgacgaacgagattccggcgactcaaaagcaatagccaccgtacccagacctccgacgattagatttgctgaacaagtcccggaccaacctgcttcgacgacccagattcaggcactacacccacctgcaaaccagacggagaaagaagaaaagcagaaggaggaagaagcgaaagaaaaaaaaatagagaaaaaaaaaagagctgacccggcccaaagaaaagagccggcccaattgtcaaaaaaaaagaagaagaagaagctggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.89

Weight (kDa)

9.99

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 3 cut(s) 46, 226, 262
AclWI GGATC 1 cut(s) 3
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 25, 238
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 2 cut(s) 332, 391
AluI AGCT 2 cut(s) 332, 391
AlwI GGATC 1 cut(s) 3
AoxI GGCC 2 cut(s) 339, 357
AspS9I GGNCC 4 cut(s) 99, 211, 340, 358
AsuC2I CCSGG 2 cut(s) 209, 338
AvaII GGWCC 2 cut(s) 99, 211
BcnI CCSGG 2 cut(s) 209, 338
BfuAI ACCTGC 3 cut(s) 46, 226, 262
Bme1390I CCNGG 2 cut(s) 209, 338
Bme18I GGWCC 2 cut(s) 99, 211
BmgT120I GGNCC 4 cut(s) 99, 211, 340, 358
BmrFI CCNGG 2 cut(s) 209, 338
BpuMI CCSGG 2 cut(s) 209, 338
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 238
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 25, 238
BseNI ACTGG 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 2 cut(s) 341, 359
BsiSI CCGG 5 cut(s) 97, 144, 209, 338, 356
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 25, 238
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 2 cut(s) 341, 359
Bsp143I GATC 2 cut(s) 8, 91
BspANI GGCC 2 cut(s) 341, 359
BspMI ACCTGC 3 cut(s) 46, 226, 262
BspPI GGATC 1 cut(s) 3
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 1 cut(s) 63
BssAI RCCGGY 1 cut(s) 355
BssMI GATC 2 cut(s) 8, 91
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 357, 393
BstKTI GATC 2 cut(s) 11, 94
BstMBI GATC 2 cut(s) 8, 91
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 207, 336
BsuRI GGCC 2 cut(s) 341, 359
BveI ACCTGC 3 cut(s) 46, 226, 262
Cac8I GCNNGC 2 cut(s) 357, 393
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 4 cut(s) 99, 211, 340, 358
Csp6I GTAC 1 cut(s) 170
CviAII CATG 1 cut(s) 396
CviJI RGCY 7 cut(s) 70, 164, 332, 341, 355, 359, 391
CviKI_1 RGCY 7 cut(s) 70, 164, 332, 341, 355, 359, 391
CviQI GTAC 1 cut(s) 170
DpnI GATC 2 cut(s) 10, 93
DpnII GATC 2 cut(s) 8, 91
Eco47I GGWCC 2 cut(s) 99, 211
FaeI CATG 1 cut(s) 399
FaiI YATR 1 cut(s) 397
FaqI GGGAC 1 cut(s) 191
FatI CATG 1 cut(s) 395
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 341, 359
HapII CCGG 5 cut(s) 97, 144, 209, 338, 356
Hin1II CATG 1 cut(s) 399
HinfI GANTC 3 cut(s) 140, 149, 235
HpaII CCGG 5 cut(s) 97, 144, 209, 338, 356
Hpy188I TCNGA 2 cut(s) 60, 183
Hpy99I CGWCG 4 cut(s) 124, 134, 187, 229
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 41, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
Hsp92II CATG 1 cut(s) 399
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 8, 91
MalI GATC 2 cut(s) 10, 93
MboI GATC 2 cut(s) 8, 91
MboII GAAGA 6 cut(s) 136, 287, 305, 391, 394, 397
MfeI CAATTG 1 cut(s) 362
MluCI AATT 1 cut(s) 362
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 83, 206
MnlI CCTC 2 cut(s) 189, 283
MroNI GCCGGC 1 cut(s) 355
MspI CCGG 5 cut(s) 97, 144, 209, 338, 356
MspR9I CCNGG 2 cut(s) 209, 338
MunI CAATTG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 338
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 2 cut(s) 209, 338
NdeII GATC 2 cut(s) 8, 91
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 262
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 140, 235
PfoI TCCNGGA 1 cut(s) 207
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 12
PspPI GGNCC 4 cut(s) 99, 211, 340, 358
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 8, 91
Sau96I GGNCC 4 cut(s) 99, 211, 340, 358
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 209, 338
SetI ASST 6 cut(s) 40, 181, 220, 256, 334, 393
SinI GGWCC 2 cut(s) 99, 211
Sse9I AATT 1 cut(s) 362
StyD4I CCNGG 2 cut(s) 207, 336
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 3 cut(s) 7, 122, 224
TasI AATT 1 cut(s) 362
TfiI GAWTC 2 cut(s) 140, 235
TspGWI ACGGA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 99, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.