RLG00000002375

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
33006425 .. 33006944
520 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002375

Sequence Viewer

Length: 387 bp
ATGGCTCTGACTCTCTCTCTCTTGAGAGGAATATCGTCGTTCTCTCCGGCGAGTGGCGGCGACAAAACTTCTCGCTTGCTTCTCTATTCTTATGGCGGTGGCGATAAATCTCTTTGTTTGTCTCTATCTTCAGTTAGCGGAGGCAAGTTTGCAGATGTTAGTAGGATTGGGATTGGAATCATGATCGATCAGATCTGGTTTGGTGGTTCTATTGATAGTGATGATGGATCTCCTCTTGATCTGTCGATCGATGGTGGTGGTAGCGACCGGCGCTGGCGGCCAGATTATTTCCGTGCAGTTAGCTGCCTTTGGTTCATGACGGCGGAGTATCTGGTCTTTGATGGGGAGGTGGTACTTTGTCTGGAGGCAGCGACAGCTTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.53

Weight (kDa)

4.45

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 57, 96, 138, 277, 323
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 53
AluBI AGCT 2 cut(s) 303, 377
AluI AGCT 2 cut(s) 303, 377
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 235
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 303, 368
AspLEI GCGC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 290, 380
BccI CCATC 3 cut(s) 218, 245, 335
BceAI ACGGC 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 274
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 58, 278, 304, 369
BlsI GCNGC 4 cut(s) 59, 279, 305, 370
BpmI CTGGAG 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 43
Bsa29I ATCGAT 2 cut(s) 186, 249
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 176
BseCI ATCGAT 2 cut(s) 186, 249
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 290, 380
BsgI GTGCAG 1 cut(s) 315
Bsh1285I CGRYCG 2 cut(s) 249, 268
BshFI GGCC 1 cut(s) 280
BshVI ATCGAT 2 cut(s) 186, 249
BsiEI CGRYCG 2 cut(s) 249, 268
BsiSI CCGG 2 cut(s) 47, 268
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 280
Bsp143I GATC 6 cut(s) 183, 187, 192, 227, 238, 246
BspACI CCGC 5 cut(s) 57, 96, 138, 277, 323
BspANI GGCC 1 cut(s) 280
BspDI ATCGAT 2 cut(s) 186, 249
BspHI TCATGA 2 cut(s) 180, 315
BspPI GGATC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 267
BssMI GATC 6 cut(s) 183, 187, 192, 227, 238, 246
BstC8I GCNNGC 2 cut(s) 77, 275
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 6 cut(s) 186, 190, 195, 230, 241, 249
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 6 cut(s) 183, 187, 192, 227, 238, 246
BstMCI CGRYCG 2 cut(s) 249, 268
BstMWI GCNNNNNNNGC 3 cut(s) 270, 277, 374
BstV1I GCAGC 2 cut(s) 290, 380
BstX2I RGATCY 2 cut(s) 192, 227
BstYI RGATCY 2 cut(s) 192, 227
Bsu15I ATCGAT 2 cut(s) 186, 249
BsuRI GGCC 1 cut(s) 280
BsuTUI ATCGAT 2 cut(s) 186, 249
Cac8I GCNNGC 2 cut(s) 77, 275
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 2 cut(s) 180, 315
CfoI GCGC 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 267
ClaI ATCGAT 2 cut(s) 186, 249
Csp6I GTAC 1 cut(s) 353
CviAII CATG 2 cut(s) 181, 316
CviJI RGCY 4 cut(s) 5, 280, 303, 377
CviKI_1 RGCY 4 cut(s) 5, 280, 303, 377
CviQI GTAC 1 cut(s) 353
DpnI GATC 6 cut(s) 185, 189, 194, 229, 240, 248
DpnII GATC 6 cut(s) 183, 187, 192, 227, 238, 246
EaeI YGGCCR 1 cut(s) 278
EciI GGCGGA 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 114
FaeI CATG 2 cut(s) 184, 319
FaiI YATR 3 cut(s) 93, 182, 317
FatI CATG 2 cut(s) 180, 315
Fnu4HI GCNGC 4 cut(s) 58, 278, 304, 369
Fsp4HI GCNGC 4 cut(s) 58, 278, 304, 369
GlaI GCGC 1 cut(s) 272
GluI GCNGC 4 cut(s) 58, 278, 304, 369
GsuI CTGGAG 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 280
HapII CCGG 2 cut(s) 47, 268
HhaI GCGC 1 cut(s) 273
Hin1II CATG 2 cut(s) 184, 319
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 2 cut(s) 10, 177
HpaII CCGG 2 cut(s) 47, 268
Hpy188I TCNGA 2 cut(s) 9, 192
Hpy188III TCNNGA 5 cut(s) 22, 181, 236, 316, 362
Hpy99I CGWCG 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 152, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 277, 374
Hsp92II CATG 2 cut(s) 184, 319
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 6 cut(s) 183, 187, 192, 227, 238, 246
LpnPI CCDG 8 cut(s) 60, 181, 259, 281, 294, 317, 347, 366
Lsp1109I GCAGC 2 cut(s) 290, 380
MalI GATC 6 cut(s) 185, 189, 194, 229, 240, 248
MboI GATC 6 cut(s) 183, 187, 192, 227, 238, 246
MboII GAAGA 1 cut(s) 120
MflI RGATCY 2 cut(s) 192, 227
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 20, 134, 243, 340, 358
MspI CCGG 2 cut(s) 47, 268
MwoI GCNNNNNNNGC 3 cut(s) 270, 277, 374
NdeII GATC 6 cut(s) 183, 187, 192, 227, 238, 246
NlaIII CATG 2 cut(s) 184, 319
PagI TCATGA 2 cut(s) 180, 315
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 4 cut(s) 59, 279, 305, 370
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 380
PsuI RGATCY 2 cut(s) 192, 227
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SatI GCNGC 4 cut(s) 58, 278, 304, 369
Sau3AI GATC 6 cut(s) 183, 187, 192, 227, 238, 246
SchI GAGTC 1 cut(s) 4
SetI ASST 3 cut(s) 305, 351, 379
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
SsiI CCGC 5 cut(s) 57, 96, 138, 277, 323
TaqI TCGA 3 cut(s) 186, 245, 249
TauI GCSGC 2 cut(s) 60, 280
TfiI GAWTC 1 cut(s) 177
TseI GCWGC 2 cut(s) 303, 368
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.