RLG00000002896

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000783
Physical Location & Seq
Reverse (-)
41432282 .. 41433705
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002896

Sequence Viewer

Length: 699 bp
ATGACTGGGGACGAATCGGACCGGCAGATCTTGAACTCGATATCGGACAGGCAGGTCTTCAACCTTTGGGCCGACGAGCTCGTCTCCCGCGGCTTCTTCCTCCACCGCACCACCGCCGACCTCAACCTCAACCACCTTGAGTCTTCGTCGCCGTCGGGTTACCCAAGGAAGACCCGGCCAAGATTCGGATCGAGAAACATATCTGAGTTGTCCCAAAATCCGCCGGAAAGGTTTCGTCACCTTTTATTCTCGATCCAAGGGCCGTGCTGGATACTGGTCATTGGCTGTTTCCAATGTCATCCCATGGGAGGAGACAATCTGGTGGCGGCTGGTTTTGATTACGGAACCGACGGGAGTTGTCGAGGCTGGACGGGGGGTAAGACCCGATTTCGGGTGTCGGAGGTAGATCCGGAGAGAGGAGCGGCGGTGACGGCTTGTGCTGAGCCTTCGTCGTCGGTGCTTGCAGAGTTCCAGCGCTGGGCATGGGCTACACTTGGTCGAGGCACCGAAGCCGGTGCTGGCGTTCGTGGCTGGAACTCTGAGATGAGGGAGGAGATCGGTGATGGCGTCCAAGCTGATTGGGCTGCCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCGTTGCTCTGGGCTCCCCAAGTTTGGGCATCACAGGGGTGGAGGTGACTGTGGGCTGGCATTTGACGGTCTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.38

Weight (kDa)

5.87

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 80
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 422
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 8 cut(s) 88, 90, 106, 114, 221, 326, 422, 425
AclWI GGATC 3 cut(s) 196, 247, 401
AcoI YGGCCR 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 567
AfeI AGCGCT 1 cut(s) 476
AfiI CCNNNNNNNGG 9 cut(s) 185, 308, 390, 391, 416, 478, 600, 644, 645
AgsI TTSAA 2 cut(s) 34, 61
AleI CACNNNNGTG 1 cut(s) 657
AluBI AGCT 2 cut(s) 79, 575
AluI AGCT 2 cut(s) 79, 575
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 88, 306
AlwI GGATC 3 cut(s) 196, 247, 401
Aor13HI TCCGGA 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 476
AoxI GGCC 3 cut(s) 69, 176, 260
ApeKI GCWGC 1 cut(s) 584
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 19, 69, 260
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 4 cut(s) 230, 439, 572, 677
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 503
BanII GRGCYC 3 cut(s) 81, 622, 636
BbsI GAAGAC 3 cut(s) 49, 135, 176
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 571
BccI CCATC 1 cut(s) 557
BceAI ACGGC 3 cut(s) 136, 247, 447
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciVI GTATCC 1 cut(s) 264
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 88, 306
BfoI RGCGCY 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 43
BfuI GTATCC 1 cut(s) 264
BglII AGATCT 1 cut(s) 27
BisI GCNGC 4 cut(s) 91, 327, 423, 585
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 4 cut(s) 92, 328, 424, 586
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 19, 69, 260
BmiI GGNNCC 3 cut(s) 346, 505, 635
BmrFI CCNGG 1 cut(s) 175
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 658
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 3 cut(s) 49, 135, 176
BplI GAGNNNNNCTC 2 cut(s) 68, 100
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 4 cut(s) 88, 164, 256, 303
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 9 cut(s) 185, 308, 390, 391, 416, 478, 600, 644, 645
Bse118I RCCGGY 2 cut(s) 21, 512
Bse1I ACTGG 2 cut(s) 10, 279
Bse8I GATNNNNATC 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 409
BseDI CCNNGG 4 cut(s) 88, 164, 256, 303
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 9 cut(s) 185, 308, 390, 391, 416, 478, 600, 644, 645
BseMII CTCAG 3 cut(s) 195, 432, 531
BseNI ACTGG 2 cut(s) 10, 279
BseRI GAGGAG 3 cut(s) 324, 432, 566
BseXI GCAGC 1 cut(s) 571
BseYI CCCAGC 2 cut(s) 477, 600
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 71, 178, 262
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 5 cut(s) 22, 175, 224, 410, 513
BslFI GGGAC 2 cut(s) 23, 196
BslI CCNNNNNNNGG 9 cut(s) 185, 308, 390, 391, 416, 478, 600, 644, 645
BsmAI GTCTC 2 cut(s) 88, 306
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 23, 196
BsnI GGCC 3 cut(s) 71, 178, 262
Bsp1286I GDGCHC 3 cut(s) 81, 622, 636
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 5 cut(s) 27, 188, 252, 406, 555
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 8 cut(s) 88, 90, 106, 114, 221, 326, 422, 425
BspANI GGCC 3 cut(s) 71, 178, 262
BspCNI CTCAG 3 cut(s) 196, 433, 532
BspEI TCCGGA 1 cut(s) 409
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 346, 505, 635
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 196, 247, 401
BspT107I GGYRCC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 422
BsrFI RCCGGY 2 cut(s) 21, 512
BsrI ACTGG 2 cut(s) 10, 279
BssAI RCCGGY 2 cut(s) 21, 512
BssECI CCNNGG 4 cut(s) 88, 164, 256, 303
BssMI GATC 5 cut(s) 27, 188, 252, 406, 555
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 3 cut(s) 164, 256, 303
Bst4CI ACNGT 3 cut(s) 611, 671, 689
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 462, 520, 678
BstDEI CTNAG 3 cut(s) 204, 441, 540
BstDSI CCRYGG 2 cut(s) 88, 303
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 5 cut(s) 30, 191, 255, 409, 558
BstMAI GTCTC 2 cut(s) 88, 306
BstMBI GATC 5 cut(s) 27, 188, 252, 406, 555
BstMWI GCNNNNNNNGC 3 cut(s) 431, 528, 581
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 173
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 3 cut(s) 49, 135, 176
BstX2I RGATCY 2 cut(s) 27, 406
BstYI RGATCY 2 cut(s) 27, 406
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 3 cut(s) 71, 178, 262
BtgI CCRYGG 2 cut(s) 88, 303
BtsCI GGATG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 462, 520, 678
CfoI GCGC 1 cut(s) 477
Cfr10I RCCGGY 2 cut(s) 21, 512
Cfr13I GGNCC 3 cut(s) 19, 69, 260
Cfr42I CCGCGG 1 cut(s) 91
CpoI CGGWCCG 1 cut(s) 19
CseI GACGC 1 cut(s) 556
CspI CGGWCCG 1 cut(s) 19
CviAII CATG 2 cut(s) 304, 483
DdeI CTNAG 3 cut(s) 204, 441, 540
DpnI GATC 5 cut(s) 29, 190, 254, 408, 557
DpnII GATC 5 cut(s) 27, 188, 252, 406, 555
DrdI GACNNNNNNGTC 2 cut(s) 53, 80
DseDI GACNNNNNNGTC 2 cut(s) 53, 80
EaeI YGGCCR 1 cut(s) 176
EciI GGCGGA 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 3 cut(s) 164, 256, 303
Eco24I GRGCYC 3 cut(s) 81, 622, 636
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 79
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 158
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 3 cut(s) 164, 256, 303
EcoT38I GRGCYC 3 cut(s) 81, 622, 636
ErhI CCWWGG 3 cut(s) 164, 256, 303
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 307, 486
FaiI YATR 4 cut(s) 200, 305, 484, 697
FaqI GGGAC 2 cut(s) 23, 196
FatI CATG 2 cut(s) 303, 482
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 4 cut(s) 91, 327, 423, 585
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 3 cut(s) 81, 622, 636
Fsp4HI GCNGC 4 cut(s) 91, 327, 423, 585
GlaI GCGC 1 cut(s) 476
GluI GCNGC 4 cut(s) 91, 327, 423, 585
GsaI CCCAGC 2 cut(s) 481, 604
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 3 cut(s) 71, 178, 262
HapII CCGG 5 cut(s) 22, 175, 224, 410, 513
HgaI GACGC 1 cut(s) 556
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 2 cut(s) 307, 486
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 3 cut(s) 14, 140, 183
HpaII CCGG 5 cut(s) 22, 175, 224, 410, 513
HphI GGTGA 4 cut(s) 230, 439, 572, 677
Hpy188I TCNGA 7 cut(s) 19, 46, 188, 205, 400, 541, 693
Hpy188III TCNNGA 4 cut(s) 31, 192, 250, 410
Hpy99I CGWCG 6 cut(s) 77, 151, 157, 353, 454, 457
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 3 cut(s) 611, 671, 689
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 528, 581
HpyF3I CTNAG 3 cut(s) 204, 441, 540
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 2 cut(s) 307, 486
HspAI GCGC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 5 cut(s) 27, 188, 252, 406, 555
LmnI GCTCC 2 cut(s) 419, 639
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 1 cut(s) 658
MaeIII GTNAC 4 cut(s) 158, 236, 427, 665
MalI GATC 5 cut(s) 29, 190, 254, 408, 557
MbiI CCGCTC 1 cut(s) 422
MboI GATC 5 cut(s) 27, 188, 252, 406, 555
MboII GAAGA 4 cut(s) 49, 88, 135, 181
MflI RGATCY 2 cut(s) 27, 406
MhlI GDGCHC 3 cut(s) 81, 622, 636
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 378
MroI TCCGGA 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 5 cut(s) 22, 175, 224, 410, 513
MspR9I CCNGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 431, 528, 581
NciI CCSGG 1 cut(s) 175
NcoI CCATGG 1 cut(s) 303
NdeII GATC 5 cut(s) 27, 188, 252, 406, 555
NlaIII CATG 2 cut(s) 307, 486
NlaIV GGNNCC 3 cut(s) 346, 505, 635
NmuCI GTSAC 3 cut(s) 236, 427, 665
OliI CACNNNNGTG 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 14, 183
PkrI GCNGC 4 cut(s) 92, 328, 424, 586
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 158
PspFI CCCAGC 2 cut(s) 477, 600
PspN4I GGNNCC 3 cut(s) 346, 505, 635
PspPI GGNCC 3 cut(s) 19, 69, 260
PsuI RGATCY 2 cut(s) 27, 406
RseI CAYNNNNRTG 1 cut(s) 657
Rsr2I CGGWCCG 1 cut(s) 19
RsrII CGGWCCG 1 cut(s) 19
SacI GAGCTC 1 cut(s) 81
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 4 cut(s) 91, 327, 423, 585
Sau3AI GATC 5 cut(s) 27, 188, 252, 406, 555
Sau96I GGNCC 3 cut(s) 19, 69, 260
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 3 cut(s) 81, 622, 636
SfaNI GCATC 1 cut(s) 658
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 8 cut(s) 88, 90, 106, 114, 221, 326, 422, 425
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 3 cut(s) 164, 256, 303
TaaI ACNGT 3 cut(s) 611, 671, 689
TaqI TCGA 5 cut(s) 38, 191, 251, 361, 499
TauI GCSGC 3 cut(s) 93, 329, 425
TfiI GAWTC 2 cut(s) 14, 183
TseFI GTSAC 3 cut(s) 236, 427, 665
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 3 cut(s) 236, 427, 665
TspGWI ACGGA 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.