RLG00000028621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000783
Physical Location & Seq
Forward (+)
25193254 .. 25194085
832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028621

Sequence Viewer

Length: 330 bp
ATGGCGACTGTTGGTGGTCATGAACGCAAGGCTGGTTTTCAGCCTTCGCCTAGAGGCAGCGACTGTTTTTGGTTGGGATCAGATCCTCTTGGAGATGAGGGCAGCGATCTGCAGAGGGTGAAGGATGGTGATATGGCCCGCTCTGCTTTCGTTGGCGGATGGGGTGGGAATCGGCTTGGTCACGGTGGCCTCCCAAGGACTATGTGGTGGAGTTTTGCAGCAGCGAGGCAACTGAGAGGTGGTGGTGGGGTGCCCTTAGTACTTCTGGGGAGTGGTTATTCAGTGTACTATCAATTACAAATACAGTGGGCAAAAGAAATTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

7.93

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 141
AciI CCGC 2 cut(s) 139, 156
AclWI GGATC 2 cut(s) 77, 85
AcsI RAATTY 1 cut(s) 318
AfaI GTAC 2 cut(s) 261, 287
AlwI GGATC 2 cut(s) 77, 85
AlwNI CAGNNNCTG 1 cut(s) 63
AoxI GGCC 2 cut(s) 135, 187
ApeKI GCWGC 4 cut(s) 57, 102, 218, 221
ApoI RAATTY 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 130, 140
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 250
BbvI GCAGC 4 cut(s) 69, 114, 230, 233
BccI CCATC 2 cut(s) 119, 153
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 110
BisI GCNGC 4 cut(s) 58, 103, 219, 222
BlsI GCNGC 4 cut(s) 59, 104, 220, 223
BmcAI AGTACT 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 130, 164
BseMII CTCAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 4 cut(s) 69, 114, 230, 233
BshFI GGCC 2 cut(s) 137, 189
BshNI GGYRCC 1 cut(s) 250
BsnI GGCC 2 cut(s) 137, 189
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 77, 82, 106
BspACI CCGC 2 cut(s) 139, 156
BspANI GGCC 2 cut(s) 137, 189
BspCNI CTCAG 1 cut(s) 225
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 114
BspPI GGATC 2 cut(s) 77, 85
BspT107I GGYRCC 1 cut(s) 250
BsrBI CCGCTC 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 77, 82, 106
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 4 cut(s) 10, 65, 185, 306
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 233, 256
BstF5I GGATG 2 cut(s) 130, 164
BstKTI GATC 3 cut(s) 80, 85, 109
BstMBI GATC 3 cut(s) 77, 82, 106
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 110
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 4 cut(s) 69, 114, 230, 233
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 2 cut(s) 137, 189
BtsCI GGATG 2 cut(s) 130, 164
BtsIMutI CAGTG 2 cut(s) 288, 311
Cac8I GCNNGC 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 63
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 2 cut(s) 260, 286
CspCI CAANNNNNGTGG 2 cut(s) 287, 322
CviAII CATG 1 cut(s) 20
CviJI RGCY 5 cut(s) 32, 43, 137, 175, 189
CviKI_1 RGCY 5 cut(s) 32, 43, 137, 175, 189
CviQI GTAC 2 cut(s) 260, 286
DdeI CTNAG 2 cut(s) 233, 256
DpnI GATC 3 cut(s) 79, 84, 108
DpnII GATC 3 cut(s) 77, 82, 106
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 21, 134, 203
FatI CATG 1 cut(s) 19
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 4 cut(s) 58, 103, 219, 222
FokI GGATG 2 cut(s) 137, 171
Fsp4HI GCNGC 4 cut(s) 58, 103, 219, 222
FspBI CTAG 1 cut(s) 51
GluI GCNGC 4 cut(s) 58, 103, 219, 222
HaeIII GGCC 2 cut(s) 137, 189
Hin1II CATG 1 cut(s) 23
HinfI GANTC 1 cut(s) 169
HphI GGTGA 2 cut(s) 130, 140
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 54, 115
HpyCH4III ACNGT 4 cut(s) 10, 65, 185, 306
HpyCH4V TGCA 2 cut(s) 112, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 233, 256
Hsp92II CATG 1 cut(s) 23
Kzo9I GATC 3 cut(s) 77, 82, 106
LpnPI CCDG 2 cut(s) 18, 251
Lsp1109I GCAGC 4 cut(s) 69, 114, 230, 233
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 179
MalI GATC 3 cut(s) 79, 84, 108
MbiI CCGCTC 1 cut(s) 141
MboI GATC 3 cut(s) 77, 82, 106
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 293, 318
MnlI CCTC 7 cut(s) 47, 91, 96, 108, 200, 219, 230
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 3 cut(s) 77, 82, 106
NlaIII CATG 1 cut(s) 23
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 179
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 4 cut(s) 59, 104, 220, 223
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 114
PstNI CAGNNNCTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 2 cut(s) 261, 287
RsaNI GTAC 2 cut(s) 260, 286
SatI GCNGC 4 cut(s) 58, 103, 219, 222
Sau3AI GATC 3 cut(s) 77, 82, 106
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 261
SduI GDGCHC 1 cut(s) 255
SetI ASST 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 293, 318
SsiI CCGC 2 cut(s) 139, 156
SspMI CTAG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 4 cut(s) 10, 65, 185, 306
TasI AATT 2 cut(s) 293, 318
TatI WGTACW 2 cut(s) 259, 285
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 2 cut(s) 288, 311
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 4 cut(s) 57, 102, 218, 221
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 2 cut(s) 288, 311
XapI RAATTY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XspI CTAG 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.