Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015060.1

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2200

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015060.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 751 bp

atgactggggacgaatcggaccggcagatcttgaactcgatatcggacaggcatgtcttcaaactttgggccgacgagctcgtctcccgcaacttcttcctccactgcaccaccgccgacctcaacctcaaccaccttgagtcttcgtcgccgtcgggttacccaaggaagacccggccaagatttggatcgagaaacagatctgagttgtcccaaaatccgccggaaaggtttcgtcaccgtcctcggcttgccgggttaaaatggggtaggtggtcacggccccaaaaaataatggtggggaacatttatcaagatctttcacgggtagtattggaaactcccaagctgagactggttcctcatattggctatgttagtcttttccccttcatgggaaggattattccagctgtaagatttgtggattctggagaaacagctagatcttatatcaaaccggaccatcttgtggacaaatttggactgcgttctattgcaagaacaagctccatctatatgaaacataacacagagtctgaagctcctgagtggaggggtccaataatgatgaacatgaattacatgattctttcatcactctatcgttactccacagaggacgggccatatagagaaaaggcaagaaccatctatgatgacttgagaggcaatttgattagaaatatggttcggaattaccaaaaaactgggttcttctggcaacggtttgatcagagaaatggcaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004573 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006457 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0031984 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 ko04141 map00510 map01100 map04141

Pfam Domains

Protein Families

Glyco_hydro_63 Glyco_hydro_63N

Protein Analysis

250

Amino Acids

29.44

Weight (kDa)

10.21

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 80
AccB7I	CCANNNNNTGG	2 cut(s)	185, 472
AciI	CCGC	3 cut(s)	88, 114, 221
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	561
AfiI	CCNNNNNNNGG	5 cut(s)	185, 368, 394, 395, 472
AgsI	TTSAA	2 cut(s)	34, 61
AluBI	AGCT	6 cut(s)	79, 349, 413, 443, 510, 545
AluI	AGCT	6 cut(s)	79, 349, 413, 443, 510, 545
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	88, 346
AlwI	GGATC	1 cut(s)	196
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	4 cut(s)	69, 176, 281, 626
ApoI	RAATTY	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	6 cut(s)	19, 69, 282, 463, 560, 626
AsuC2I	CCSGG	2 cut(s)	175, 256
AsuHPI	GGTGA	1 cut(s)	230
AvaII	GGWCC	3 cut(s)	19, 463, 560
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	3 cut(s)	49, 135, 176
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	3 cut(s)	474, 521, 659
BceAI	ACGGC	2 cut(s)	136, 296
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	175, 256
BcoDI	GTCTC	2 cut(s)	88, 346
BfaI	CTAG	1 cut(s)	444
BglII	AGATCT	4 cut(s)	27, 200, 316, 446
Bme1390I	CCNGG	2 cut(s)	175, 256
Bme18I	GGWCC	3 cut(s)	19, 463, 560
BmgT120I	GGNCC	6 cut(s)	19, 69, 282, 463, 560, 626
BmiI	GGNNCC	3 cut(s)	284, 360, 561
BmrFI	CCNGG	2 cut(s)	175, 256
BmrI	ACTGGG	2 cut(s)	15, 720
BmuI	ACTGGG	2 cut(s)	15, 720
BpiI	GAAGAC	3 cut(s)	49, 135, 176
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	2 cut(s)	158, 685
BpuMI	CCSGG	2 cut(s)	175, 256
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	164, 245
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 368, 394, 395, 472
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	3 cut(s)	10, 360, 715
Bse8I	GATNNNNATC	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	164, 245
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	5 cut(s)	185, 368, 394, 395, 472
BseMII	CTCAG	3 cut(s)	195, 341, 540
BseNI	ACTGG	3 cut(s)	10, 360, 715
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	4 cut(s)	71, 178, 283, 628
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	5 cut(s)	22, 175, 224, 255, 461
BslFI	GGGAC	2 cut(s)	23, 196
BslI	CCNNNNNNNGG	5 cut(s)	185, 368, 394, 395, 472
BsmAI	GTCTC	2 cut(s)	88, 346
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	23, 196
BsnI	GGCC	4 cut(s)	71, 178, 283, 628
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
BspACI	CCGC	3 cut(s)	88, 114, 221
BspANI	GGCC	4 cut(s)	71, 178, 283, 628
BspCNI	CTCAG	3 cut(s)	196, 342, 541
BspLI	GGNNCC	3 cut(s)	284, 360, 561
BspPI	GGATC	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	10, 360, 715
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	164, 245
BssMI	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	242, 729
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	204, 350, 549
BstEII	GGTNACC	1 cut(s)	158
BstKTI	GATC	6 cut(s)	30, 191, 203, 319, 449, 736
BstMAI	GTCTC	2 cut(s)	88, 346
BstMBI	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
BstNSI	RCATGY	1 cut(s)	56
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	173, 254
BstV2I	GAAGAC	3 cut(s)	49, 135, 176
BstX2I	RGATCY	4 cut(s)	27, 200, 316, 446
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	4 cut(s)	27, 200, 316, 446
BsuRI	GGCC	4 cut(s)	71, 178, 283, 628
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	6 cut(s)	19, 69, 282, 463, 560, 626
CpoI	CGGWCCG	1 cut(s)	19
CspI	CGGWCCG	1 cut(s)	19
CviAII	CATG	4 cut(s)	53, 394, 577, 586
DdeI	CTNAG	3 cut(s)	204, 350, 549
DpnI	GATC	6 cut(s)	29, 190, 202, 318, 448, 735
DpnII	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
DrdI	GACNNNNNNGTC	2 cut(s)	53, 80
DseDI	GACNNNNNNGTC	2 cut(s)	53, 80
EaeI	YGGCCR	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	3 cut(s)	19, 463, 560
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	158
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	4 cut(s)	56, 397, 580, 589
FaqI	GGGAC	2 cut(s)	23, 196
FatI	CATG	4 cut(s)	52, 393, 576, 585
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	733
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	71, 178, 283, 628
HapII	CCGG	5 cut(s)	22, 175, 224, 255, 461
Hin1II	CATG	4 cut(s)	56, 397, 580, 589
HinfI	GANTC	5 cut(s)	14, 140, 428, 536, 589
HpaII	CCGG	5 cut(s)	22, 175, 224, 255, 461
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	6 cut(s)	19, 46, 205, 541, 696, 738
Hpy188III	TCNNGA	5 cut(s)	31, 192, 314, 432, 548
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	3 cut(s)	77, 151, 157
HpyAV	CCTTC	2 cut(s)	393, 400
HpyCH4III	ACNGT	2 cut(s)	242, 729
HpyCH4V	TGCA	2 cut(s)	108, 500
HpyF3I	CTNAG	3 cut(s)	204, 350, 549
Hsp92II	CATG	4 cut(s)	56, 397, 580, 589
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
LmnI	GCTCC	2 cut(s)	515, 550
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	4 cut(s)	158, 236, 276, 608
MalI	GATC	6 cut(s)	29, 190, 202, 318, 448, 735
MboI	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
MboII	GAAGA	5 cut(s)	49, 88, 135, 181, 709
MflI	RGATCY	4 cut(s)	27, 200, 316, 446
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	479, 580, 673, 697
MlyI	GAGTC	2 cut(s)	149, 545
MnlI	CCTC	8 cut(s)	110, 131, 137, 255, 372, 549, 613, 662
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	5 cut(s)	22, 175, 224, 255, 461
MspR9I	CCNGG	2 cut(s)	175, 256
NciI	CCSGG	2 cut(s)	175, 256
NdeII	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
NlaIII	CATG	4 cut(s)	56, 397, 580, 589
NlaIV	GGNNCC	3 cut(s)	284, 360, 561
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	236, 276
NspI	RCATGY	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	14, 428, 589
PflMI	CCANNNNNTGG	2 cut(s)	185, 472
PleI	GAGTC	2 cut(s)	148, 544
PpsI	GAGTC	2 cut(s)	148, 544
Psp124BI	GAGCTC	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	284, 360, 561
PspPI	GGNCC	6 cut(s)	19, 69, 282, 463, 560, 626
PsrI	GAACNNNNNNTAC	2 cut(s)	566, 598
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	4 cut(s)	27, 200, 316, 446
PvuII	CAGCTG	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	518
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	260
Sau3AI	GATC	6 cut(s)	27, 188, 200, 316, 446, 733
Sau96I	GGNCC	6 cut(s)	19, 69, 282, 463, 560, 626
SchI	GAGTC	2 cut(s)	149, 545
ScrFI	CCNGG	2 cut(s)	175, 256
SduI	GDGCHC	1 cut(s)	81
SinI	GGWCC	3 cut(s)	19, 463, 560
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	137, 664
SmoI	CTYRAG	2 cut(s)	137, 664
Sse9I	AATT	4 cut(s)	479, 580, 673, 697
SsiI	CCGC	3 cut(s)	88, 114, 221
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	173, 254
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	242, 729
TaqI	TCGA	2 cut(s)	38, 191
TasI	AATT	4 cut(s)	479, 580, 673, 697
TfiI	GAWTC	3 cut(s)	14, 428, 589
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	236, 276
Tsp45I	GTSAC	2 cut(s)	236, 276
TspDTI	ATGAA	5 cut(s)	382, 536, 585, 587, 593
TspRI	CASTG	1 cut(s)	110
Van91I	CCANNNNNTGG	2 cut(s)	185, 472
VpaK11BI	GGWCC	3 cut(s)	19, 463, 560
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.