Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

38009499 .. 38016948

Gene Structure 7450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG360200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGAAATTGGCCATACGAACTCATGCCGGGAAAGCTAAAGTTGTCGGAACAATTTTGGGGATAGGGGGGGCTATGGTTTTCACCTTCTACAAAGGCTTTCAGATTAATATTTGGTCTACAAACATTAATCTTCTACGCCATAACGGTGACAAAAACAATCATGCTCAAGTTCCATCATCAGCAAACAAAGACTCAGGAAGTATTTTATTAGGCTCAGGCATGGCTCTGGGTAGCTATCTCGGGGCAGGTCCAACTAGCTGTCTTTGGCTCATGTTGGCGCAGTATCTGGTCTTCGATGGAGGAGGCGGTAGTTTGCCTCGGGTTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAGCAGTGGCTATGGCGATGGCCGGTGCAGTGCCATCTCTGAGTGTGCGTTGGATCTTTCCAACGATGAAGGTGCTGGGTCGGATTGATGGTTGCGGTGAGGACAACAAAATCTTCGCCGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

160

Amino Acids

16.72

Weight (kDa)

9.51

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	3 cut(s)	309, 450, 477
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	2 cut(s)	12, 375
AcuI	CTGAAG	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	326
AjiI	CACGTC	1 cut(s)	342
AluBI	AGCT	3 cut(s)	38, 237, 261
AluI	AGCT	3 cut(s)	38, 237, 261
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	2 cut(s)	242, 321
AoxI	GGCC	2 cut(s)	12, 375
AseI	ATTAAT	2 cut(s)	108, 129
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	76, 161, 464
AvaI	CYCGRG	2 cut(s)	242, 321
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	2 cut(s)	286, 339
BccI	CCATC	5 cut(s)	184, 293, 367, 397, 437
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	2 cut(s)	258, 481
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	478
BlsI	GCNGC	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	2 cut(s)	242, 321
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	31
BpiI	GAAGAC	2 cut(s)	286, 339
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	2 cut(s)	377, 473
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	210, 231, 386
BseRI	GAGGAG	1 cut(s)	318
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	14, 377
BsiHKCI	CYCGRG	2 cut(s)	242, 321
BsiSI	CCGG	3 cut(s)	30, 378, 474
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	14, 377
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	2 cut(s)	242, 321
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	3 cut(s)	309, 450, 477
BspANI	GGCC	2 cut(s)	14, 377
BspCNI	CTCAG	3 cut(s)	209, 230, 387
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	335
BsrFI	RCCGGY	2 cut(s)	377, 473
BssAI	RCCGGY	2 cut(s)	377, 473
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	196, 217, 395
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	29
BstV2I	GAAGAC	2 cut(s)	286, 339
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	14, 377
BtgZI	GCGATG	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	342
BtsI	GCAGTG	2 cut(s)	366, 390
BtsIMutI	CAGTG	2 cut(s)	366, 390
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	475
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	2 cut(s)	377, 473
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	4 cut(s)	26, 164, 223, 274
DdeI	CTNAG	3 cut(s)	196, 217, 395
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	2 cut(s)	12, 375
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	242, 321
FaeI	CATG	4 cut(s)	29, 167, 226, 277
FaiI	YATR	8 cut(s)	17, 27, 77, 144, 165, 224, 275, 368
FatI	CATG	4 cut(s)	25, 163, 222, 273
FblI	GTMKAC	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	478
FspBI	CTAG	2 cut(s)	258, 481
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	478
GsaI	CCCAGC	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	14, 377
HapII	CCGG	3 cut(s)	30, 378, 474
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	29, 167, 226, 277
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	30, 378, 474
HphI	GGTGA	3 cut(s)	76, 161, 464
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	4 cut(s)	50, 105, 396, 438
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	97, 418
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	196, 217, 395
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	29, 167, 226, 277
HspAI	GCGC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
Kzo9I	GATC	1 cut(s)	408
LpnPI	CCDG	9 cut(s)	43, 183, 204, 215, 234, 275, 369, 391, 416
MaeI	CTAG	2 cut(s)	258, 481
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	4 cut(s)	125, 286, 339, 460
MflI	RGATCY	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	8, 54
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	5 cut(s)	28, 278, 386, 416, 440
MnlI	CCTC	4 cut(s)	296, 299, 330, 448
Mox20I	TGGCCA	1 cut(s)	14
MreI	CGCCGGCG	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	108, 129
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	30, 378, 474
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	408
NgoMIV	GCCGGC	1 cut(s)	473
NlaIII	CATG	4 cut(s)	29, 167, 226, 277
NmuCI	GTSAC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	475
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	479
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PshBI	ATTAAT	2 cut(s)	108, 129
PspFI	CCCAGC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	108, 129
SatI	GCNGC	1 cut(s)	478
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	7 cut(s)	40, 89, 239, 253, 263, 344, 429
SgrAI	CRCCGGYG	1 cut(s)	473
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	8, 54
SsiI	CCGC	3 cut(s)	309, 450, 477
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	258, 481
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	8, 54
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	2 cut(s)	108, 129
Tru9I	TTAA	2 cut(s)	108, 129
TscAI	CASTG	2 cut(s)	366, 390
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	366, 390
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	251
VspI	ATTAAT	2 cut(s)	108, 129
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	2 cut(s)	258, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.