Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

25822897 .. 25824027

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAGGGATGTCCTCCCTTCATTTGTCGGGTTGGTTCGTGAGCAGTGGTGGCGGGGGTGTTCTCCGGCGTGCCCATCTGTTTTTTCCTTACAGTTTTATTCTCAGTCCAATGGTCGTGCTGGATGCTGGTCATTGGCTACTTCTGATGTCGTCCAGTGGGGGAGACAATCTGGTGGTGGATGATTTTGATTGTGGAGCTGATGGGGTCGTCGGGGCTGGTAAGACCCGATCTCAGGTGTCGAAGGCGACTCCGGAGCGAGGAGCGGTGGTGACGGATTTTGCTGAGACTCCATCATCAGTGCTTGCAGAGTTCCGGCGCTGGGCATGGGCTGCACTTGGTAGAGGCAACGGTGCCGGTGCTGACTTTGGTGGCTGGAACTCTGAGATGAGGGAGATCGACAATGGCATCCGAGCTGATTGGGCTACCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCCTTGCTTTGGGCTCCCCGAGGTTGGGCCTCATAGGGGGTGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.03

Weight (kDa)

5.46

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	2 cut(s)	54, 266
AfiI	CCNNNNNNNGG	8 cut(s)	235, 260, 322, 441, 470, 485, 486, 497
AluBI	AGCT	2 cut(s)	200, 416
AluI	AGCT	2 cut(s)	200, 416
Alw26I	GTCTC	2 cut(s)	159, 281
Ama87I	CYCGRG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	463, 477
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	84, 197, 301
BcoDI	GTCTC	2 cut(s)	159, 281
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	3 cut(s)	355, 462, 476
BmsI	GCATC	2 cut(s)	115, 417
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	8 cut(s)	235, 260, 322, 441, 470, 485, 486, 497
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	156
BseAI	TCCGGA	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	15, 130, 187, 408
BseLI	CCNNNNNNNGG	8 cut(s)	235, 260, 322, 441, 470, 485, 486, 497
BseMII	CTCAG	4 cut(s)	118, 248, 276, 375
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	2 cut(s)	321, 441
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	490
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	4 cut(s)	67, 254, 316, 357
BslI	CCNNNNNNNGG	8 cut(s)	235, 260, 322, 441, 470, 485, 486, 497
BsmAI	GTCTC	2 cut(s)	159, 281
BsnI	GGCC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	76, 463, 477
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	230, 396
BspACI	CCGC	2 cut(s)	54, 266
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	4 cut(s)	117, 247, 277, 376
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	355, 462, 476
BspT107I	GGYRCC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	230, 396
Bst4CI	ACNGT	3 cut(s)	95, 353, 452
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	72, 306
BstDEI	CTNAG	4 cut(s)	104, 234, 285, 384
BstF5I	GGATG	4 cut(s)	15, 130, 187, 408
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	2 cut(s)	233, 399
BstMAI	GTCTC	2 cut(s)	159, 281
BstMBI	GATC	2 cut(s)	230, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 332, 422
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	15, 130, 187, 408
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	3 cut(s)	52, 163, 306
Cac8I	GCNNGC	2 cut(s)	72, 306
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	488
CviAII	CATG	1 cut(s)	327
DdeI	CTNAG	4 cut(s)	104, 234, 285, 384
DpnI	GATC	2 cut(s)	232, 398
DpnII	GATC	2 cut(s)	230, 396
Eco24I	GRGCYC	2 cut(s)	463, 477
Eco88I	CYCGRG	1 cut(s)	479
EcoT38I	GRGCYC	2 cut(s)	463, 477
FaeI	CATG	1 cut(s)	330
FaiI	YATR	2 cut(s)	328, 495
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	4 cut(s)	22, 137, 194, 395
FriOI	GRGCYC	2 cut(s)	463, 477
Fsp4HI	GCNGC	1 cut(s)	333
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	2 cut(s)	325, 445
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	4 cut(s)	67, 254, 316, 357
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	250, 289
HpaII	CCGG	4 cut(s)	67, 254, 316, 357
HphI	GGTGA	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	147, 385, 413
Hpy188III	TCNNGA	2 cut(s)	40, 254
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	29, 238
HpyCH4III	ACNGT	3 cut(s)	95, 353, 452
HpyCH4V	TGCA	2 cut(s)	308, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 332, 422
HpyF3I	CTNAG	4 cut(s)	104, 234, 285, 384
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	319
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	230, 396
LmnI	GCTCC	5 cut(s)	197, 256, 263, 466, 480
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	115, 417
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	232, 398
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	2 cut(s)	230, 396
MhlI	GDGCHC	3 cut(s)	76, 463, 477
MlyI	GAGTC	2 cut(s)	244, 283
MnlI	CCTC	8 cut(s)	25, 254, 338, 384, 445, 475, 498, 501
MroI	TCCGGA	1 cut(s)	253
MspI	CCGG	4 cut(s)	67, 254, 316, 357
MwoI	GCNNNNNNNGC	3 cut(s)	51, 332, 422
NdeII	GATC	2 cut(s)	230, 396
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	355, 462, 476
NmuCI	GTSAC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	244, 283
PpsI	GAGTC	2 cut(s)	244, 283
PspFI	CCCAGC	2 cut(s)	321, 441
PspN4I	GGNNCC	3 cut(s)	355, 462, 476
PspPI	GGNCC	1 cut(s)	488
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	2 cut(s)	230, 396
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	2 cut(s)	244, 283
SduI	GDGCHC	3 cut(s)	76, 463, 477
SetI	ASST	6 cut(s)	202, 240, 418, 431, 486, 509
SfaNI	GCATC	2 cut(s)	115, 417
SsiI	CCGC	2 cut(s)	54, 266
TaaI	ACNGT	3 cut(s)	95, 353, 452
TaqI	TCGA	2 cut(s)	242, 399
TscAI	CASTG	3 cut(s)	52, 163, 306
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	3 cut(s)	52, 163, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.