Rh2BG312500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000783
Physical Location & Seq
Reverse (-)
36743749 .. 36744060
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG312500.1

Sequence Viewer

Length: 312 bp
ATGGCTCTGACTCTCTCCCGAGAGAAATATCGTCGTCTCCTCCCTTCGGCTAGCGACGAGGACAAAGCTTCTCGCTTGCTTCTCTCTTCTTATGGCAGCGGCGATAAATCTCTTCGTCTTCATCTATCTTCGGTTTGGGGAGGCGATTTAGCTGATGTTGGTGGGATTGGGATTGGAATCGTGATCGTTCAGATCTGGTTTGGTAGTCCTATTGATAGTGATGATGGATATGCTTTTGCTCCATCGATTGATGGTGGTGGTAGCGACCGACGCGGTGGCCAGATTGCTTCTGTTGGAGGTGGTAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.65

Weight (kDa)

5.66

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 2 cut(s) 99, 273
AcoI YGGCCR 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 68, 152
AluI AGCT 2 cut(s) 68, 152
Alw26I GTCTC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 18
BalI TGGCCA 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 108
BccI CCATC 3 cut(s) 218, 245, 250
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 51
BglII AGATCT 1 cut(s) 192
BisI GCNGC 2 cut(s) 97, 100
BlsI GCNGC 2 cut(s) 98, 101
BmeT110I CYCGRG 1 cut(s) 18
BmtI GCTAGC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 245
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 2 cut(s) 183, 192
BspACI CCGC 2 cut(s) 99, 273
BspANI GGCC 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 245
BspFNI CGCG 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 54
BssMI GATC 2 cut(s) 183, 192
Bst6I CTCTTC 2 cut(s) 91, 117
BstC8I GCNNGC 2 cut(s) 52, 77
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 2 cut(s) 186, 195
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 183, 192
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 245
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 52, 77
ClaI ATCGAT 1 cut(s) 245
CseI GACGC 1 cut(s) 279
CviJI RGCY 6 cut(s) 5, 50, 68, 152, 279, 308
CviKI_1 RGCY 6 cut(s) 5, 50, 68, 152, 279, 308
DpnI GATC 2 cut(s) 185, 194
DpnII GATC 2 cut(s) 183, 192
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 91, 117
EarI CTCTTC 2 cut(s) 91, 117
Eco88I CYCGRG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 41
FaiI YATR 2 cut(s) 93, 231
Fnu4HI GCNGC 2 cut(s) 97, 100
Fsp4HI GCNGC 2 cut(s) 97, 100
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 97, 100
HaeIII GGCC 1 cut(s) 279
HgaI GACGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 10, 177
Hpy188I TCNGA 2 cut(s) 9, 192
Hpy188III TCNNGA 2 cut(s) 18, 181
Hpy99I CGWCG 3 cut(s) 36, 59, 273
HpyAV CCTTC 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 183, 192
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 181, 293
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 1 cut(s) 51
MalI GATC 2 cut(s) 185, 194
MboI GATC 2 cut(s) 183, 192
MboII GAAGA 4 cut(s) 78, 104, 110, 120
MflI RGATCY 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 4 cut(s) 50, 52, 134, 290
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 99
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 2 cut(s) 183, 192
NheI GCTAGC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 98, 101
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 192
SatI GCNGC 2 cut(s) 97, 100
Sau3AI GATC 2 cut(s) 183, 192
SchI GAGTC 1 cut(s) 4
SetI ASST 3 cut(s) 70, 154, 301
SsiI CCGC 2 cut(s) 99, 273
SspMI CTAG 1 cut(s) 51
TaqI TCGA 1 cut(s) 245
TaqII GACCGA 1 cut(s) 282
TauI GCSGC 1 cut(s) 102
TfiI GAWTC 1 cut(s) 177
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 1 cut(s) 110
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.