Rh4DG429600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
63439852 .. 63442085
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG429600.1

Sequence Viewer

Length: 321 bp
ATGTCTCGGGCTGATCTATACCCGAGATGGTCTTTTGGTTCGAAGGTGACTGTGGTGACTGCTAGTGGTTTTGAACGTAAGGCTGGAGGCGGCGGCGACGTCTGGGTGGGATCTGTTCCCCTTGGAGAGGAGAGCAGCGTTCTGTTGATGATGATGAATGGTGATTTGGCTCGATCTGTTTTCATTGCCGATTTGTGTTGCTATTGGTTGATTATCAAGTTGCTGGAAGGTTCAAGGATATCTACGTTGGCTGTAAAAGCAGCTCTTAGACCCACTTATAAGCTACAAAATAATATAAGCAAGGAGCATTTAAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

9.06

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AatII GACGTC 1 cut(s) 102
AciI CCGC 2 cut(s) 90, 93
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 74, 234
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 263, 283
AluI AGCT 2 cut(s) 263, 283
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 2 cut(s) 6, 22
ApeKI GCWGC 2 cut(s) 135, 260
ApoI RAATTY 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 58, 67, 173
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 6, 22
BbvI GCAGC 2 cut(s) 147, 272
BccI CCATC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 91, 94, 136, 261
BlsI GCNGC 4 cut(s) 92, 95, 137, 262
BmeT110I CYCGRG 2 cut(s) 6, 22
BpmI CTGGAG 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 147, 272
BsiHKCI CYCGRG 2 cut(s) 6, 22
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 9
BsoBI CYCGRG 2 cut(s) 6, 22
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 13, 110, 173
BspACI CCGC 2 cut(s) 90, 93
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 13, 110, 173
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 125
BstKTI GATC 3 cut(s) 16, 113, 176
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 13, 110, 173
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 147, 272
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
CviJI RGCY 6 cut(s) 11, 83, 170, 251, 263, 283
CviKI_1 RGCY 6 cut(s) 11, 83, 170, 251, 263, 283
DdeI CTNAG 1 cut(s) 266
DpnI GATC 3 cut(s) 15, 112, 175
DpnII GATC 3 cut(s) 13, 110, 173
DraI TTTAAA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 6, 22
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaiI YATR 3 cut(s) 19, 279, 296
FalI AAGNNNNNCTT 2 cut(s) 249, 281
Fnu4HI GCNGC 4 cut(s) 91, 94, 136, 261
Fsp4HI GCNGC 4 cut(s) 91, 94, 136, 261
FspBI CTAG 1 cut(s) 63
GluI GCNGC 4 cut(s) 91, 94, 136, 261
GsuI CTGGAG 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 99
HphI GGTGA 3 cut(s) 58, 67, 173
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 37, 221
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 3 cut(s) 76, 99, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 3 cut(s) 76, 99, 245
Hsp92I GRCGYC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 13, 110, 173
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 3 cut(s) 69, 88, 209
Lsp1109I GCAGC 2 cut(s) 147, 272
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 76, 99, 245
MaeIII GTNAC 2 cut(s) 46, 55
MalI GATC 3 cut(s) 15, 112, 175
MboI GATC 3 cut(s) 13, 110, 173
MflI RGATCY 1 cut(s) 110
MluCI AATT 1 cut(s) 313
MnlI CCTC 2 cut(s) 80, 121
MseI TTAA 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 3 cut(s) 13, 110, 173
NmuCI GTSAC 2 cut(s) 46, 55
NspV TTCGAA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 92, 95, 137, 262
PsiI TTATAA 1 cut(s) 279
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 4 cut(s) 91, 94, 136, 261
Sau3AI GATC 3 cut(s) 13, 110, 173
SetI ASST 7 cut(s) 48, 79, 102, 232, 248, 265, 285
SfuI TTCGAA 1 cut(s) 41
SmiI ATTTAAAT 1 cut(s) 312
Sse9I AATT 1 cut(s) 313
SsiI CCGC 2 cut(s) 90, 93
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 121
SwaI ATTTAAAT 1 cut(s) 312
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 3 cut(s) 79, 102, 248
TaqI TCGA 2 cut(s) 41, 172
TasI AATT 1 cut(s) 313
TauI GCSGC 2 cut(s) 93, 96
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseFI GTSAC 2 cut(s) 46, 55
TseI GCWGC 2 cut(s) 135, 260
Tsp45I GTSAC 2 cut(s) 46, 55
TspDTI ATGAA 2 cut(s) 170, 172
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 313
XspI CTAG 1 cut(s) 63
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.