RLG00000002823

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000783
Physical Location & Seq
Reverse (-)
40363423 .. 40364120
698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002823

Sequence Viewer

Length: 588 bp
ATGGCTCTGACTCTCTTTCGAGAGAAATATCGTCGTTCCCTTTCTTCGGCGAGCGGCGGCGACAAACCTTCTTGTTTGCTTCTCTATTCTTATGGCGGCGGCGATAAATCTTTTCGTCTGCCTCTATCTTCGGTTAGGAGAGGCTATTTTGCTGATGTTGGTGGGATTGGATTTGGAATCATGATCGATCAGATCTGGTTTGGTGGTTCTGTTTATAGGGATGATGCATCTGCTCTTGATCCGACTATTGATGGTGGTGGTAGCGACCAAAGCGGGGGCCAGATTGCTTCTGTTGGAGGTGGTTTCAGGGAAGGTGCAGTGGGCTGCCTTTGGTTCATGACGACCGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTGTGTCTGGAGGAGGCGACGGCTTCTGGTTGGAATCTGACCCCCTTATGGGATCAGATTCGGTATCTGGATCTTGTCAGGGAGAGATTGCGGACATGGCAGTGTTCAATCAACGTCGTGGGTTGGAGGTCGAAGGTGTGGGATCTGTGGCACCGACGGAGGGTATCGGCGGCGGCGTGACCAGCGACTTTTGGTTGGTAAGGTACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

20.38

Weight (kDa)

4.4

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 8 cut(s) 54, 57, 96, 99, 273, 467, 546, 549
AclWI GGATC 4 cut(s) 233, 436, 454, 526
AfaI GTAC 2 cut(s) 376, 581
AfiI CCNNNNNNNGG 5 cut(s) 46, 274, 424, 425, 536
AgsI TTSAA 1 cut(s) 484
AlwI GGATC 4 cut(s) 233, 436, 454, 526
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 526
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 245, 356
BceAI ACGGC 1 cut(s) 412
BglII AGATCT 1 cut(s) 192
BisI GCNGC 7 cut(s) 55, 58, 97, 100, 325, 547, 550
BlsI GCNGC 7 cut(s) 56, 59, 98, 101, 326, 548, 551
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 278, 528
BmsI GCATC 2 cut(s) 214, 236
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 186
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 274, 424, 425, 536
Bse1I ACTGG 1 cut(s) 587
BseCI ATCGAT 1 cut(s) 186
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 5 cut(s) 46, 274, 424, 425, 536
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 526
BshVI ATCGAT 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 345
BslI CCNNNNNNNGG 5 cut(s) 46, 274, 424, 425, 536
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
BspACI CCGC 8 cut(s) 54, 57, 96, 99, 273, 467, 546, 549
BspANI GGCC 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 186
BspHI TCATGA 2 cut(s) 180, 336
BspLI GGNNCC 2 cut(s) 278, 528
BspPI GGATC 4 cut(s) 233, 436, 454, 526
BspT107I GGYRCC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 587
BssMI GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
Bst4CI ACNGT 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 7 cut(s) 186, 190, 195, 241, 431, 449, 521
BstMBI GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 270, 473, 558
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 3 cut(s) 192, 446, 518
BstYI RGATCY 3 cut(s) 192, 446, 518
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 186
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 324, 483
BtsIMutI CAGTG 2 cut(s) 324, 483
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 2 cut(s) 180, 336
Cfr13I GGNCC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 186
Csp6I GTAC 2 cut(s) 375, 580
CviAII CATG 3 cut(s) 181, 337, 472
CviJI RGCY 5 cut(s) 5, 144, 279, 324, 399
CviKI_1 RGCY 5 cut(s) 5, 144, 279, 324, 399
CviQI GTAC 2 cut(s) 375, 580
DpnI GATC 7 cut(s) 185, 189, 194, 240, 430, 448, 520
DpnII GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 3 cut(s) 184, 340, 475
FaiI YATR 6 cut(s) 93, 182, 216, 338, 425, 473
FatI CATG 3 cut(s) 180, 336, 471
FauI CCCGC 1 cut(s) 266
Fnu4HI GCNGC 7 cut(s) 55, 58, 97, 100, 325, 547, 550
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 7 cut(s) 55, 58, 97, 100, 325, 547, 550
GluI GCNGC 7 cut(s) 55, 58, 97, 100, 325, 547, 550
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 3 cut(s) 184, 340, 475
HinfI GANTC 4 cut(s) 10, 177, 410, 434
Hpy188I TCNGA 5 cut(s) 9, 192, 243, 415, 433
Hpy188III TCNNGA 6 cut(s) 20, 181, 236, 337, 384, 444
Hpy99I CGWCG 4 cut(s) 36, 398, 495, 535
HpyAV CCTTC 3 cut(s) 78, 305, 503
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 227, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 270, 473, 558
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 3 cut(s) 184, 340, 475
Kzo9I GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 214, 236
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 1 cut(s) 553
MalI GATC 7 cut(s) 185, 189, 194, 240, 430, 448, 520
MbiI CCGCTC 1 cut(s) 54
MboI GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
MboII GAAGA 3 cut(s) 36, 120, 349
MflI RGATCY 3 cut(s) 192, 446, 518
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 4 cut(s) 266, 274, 387, 480
MnlI CCTC 8 cut(s) 132, 134, 290, 362, 380, 383, 496, 529
Mph1103I ATGCAT 1 cut(s) 229
MslI CAYNNNNRTG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 270, 473, 558
NdeII GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
NlaIII CATG 3 cut(s) 184, 340, 475
NlaIV GGNNCC 2 cut(s) 278, 528
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 229
PagI TCATGA 2 cut(s) 180, 336
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 3 cut(s) 177, 410, 434
PkrI GCNGC 7 cut(s) 56, 59, 98, 101, 326, 548, 551
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 278, 528
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 3 cut(s) 192, 446, 518
RsaI GTAC 2 cut(s) 376, 581
RsaNI GTAC 2 cut(s) 375, 580
RseI CAYNNNNRTG 1 cut(s) 476
SatI GCNGC 7 cut(s) 55, 58, 97, 100, 325, 547, 550
Sau3AI GATC 7 cut(s) 183, 187, 192, 238, 428, 446, 518
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 4
SetI ASST 8 cut(s) 70, 301, 316, 373, 493, 507, 514, 581
SfaNI GCATC 2 cut(s) 214, 236
SmiMI CAYNNNNRTG 1 cut(s) 476
SsiI CCGC 8 cut(s) 54, 57, 96, 99, 273, 467, 546, 549
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 493
TaqI TCGA 4 cut(s) 19, 186, 360, 507
TaqII GACCGA 1 cut(s) 359
TauI GCSGC 6 cut(s) 57, 60, 99, 102, 549, 552
TfiI GAWTC 3 cut(s) 177, 410, 434
TscAI CASTG 2 cut(s) 324, 483
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 324, 483
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.