Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

11649420 .. 11649832

Gene Structure 413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGACTGGGGACGAATCGGACCGGCAGATCTTGAACTCGATATCGGACAGGCAGGTCTTCAACCTTTGGGCCGACGAGCTCGTCTCCCGCGGCTTCTTCCTCCACCGCACCACCGCCGACCTCAACCTCAACCACCTTGAGTCTTCGTCGCCGTCGGGTTACCCAAGGAAGACCCGGCCAAGATTCGGATCGAGAAACATATCTGAGTTGTCCCAAAATCCGCCGGAAAGGTTTCGTCACCTGAAGTCTTCACCGCCCTGGATCGGATTCTTGGGCTCCGACGCTCCAACGAGGAGGAGGAGGTGTGAGAGAGCAGTGAAGTCTTCACCGCCCTGGATCGGATTTTTGGGCTCCGATGCTCCAACGAGGAGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

11.31

Isoelectric Point (pI)

79.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 80
Acc36I	ACCTGC	1 cut(s)	43
AccII	CGCG	1 cut(s)	90
AciI	CCGC	7 cut(s)	88, 90, 106, 114, 221, 254, 329
AclWI	GGATC	3 cut(s)	196, 269, 344
AcoI	YGGCCR	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	3 cut(s)	185, 263, 338
AgsI	TTSAA	2 cut(s)	34, 61
AjnI	CCWGG	2 cut(s)	257, 332
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	196, 269, 344
AoxI	GGCC	2 cut(s)	69, 176
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	19, 69
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	230, 243, 318
AvaII	GGWCC	1 cut(s)	19
BanII	GRGCYC	3 cut(s)	81, 278, 353
BbsI	GAAGAC	5 cut(s)	49, 135, 176, 240, 315
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	2 cut(s)	259, 334
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	27
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	3 cut(s)	175, 259, 334
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 69
BmiI	GGNNCC	2 cut(s)	277, 352
BmrFI	CCNGG	3 cut(s)	175, 259, 334
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	15
BpiI	GAAGAC	5 cut(s)	49, 135, 176, 240, 315
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	187
BsaJI	CCNNGG	4 cut(s)	88, 164, 257, 332
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 263, 338
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	10
Bse8I	GATNNNNATC	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	259, 334
BseDI	CCNNGG	4 cut(s)	88, 164, 257, 332
BseJI	GATNNNNATC	1 cut(s)	187
BseLI	CCNNNNNNNGG	3 cut(s)	185, 263, 338
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	3 cut(s)	307, 310, 313
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	71, 178
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	22, 175, 224
BslFI	GGGAC	2 cut(s)	23, 196
BslI	CCNNNNNNNGG	3 cut(s)	185, 263, 338
BsmAI	GTCTC	1 cut(s)	88
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	23, 196
BsnI	GGCC	2 cut(s)	71, 178
Bsp1286I	GDGCHC	3 cut(s)	81, 278, 353
Bsp143I	GATC	4 cut(s)	27, 188, 261, 336
BspACI	CCGC	7 cut(s)	88, 90, 106, 114, 221, 254, 329
BspANI	GGCC	2 cut(s)	71, 178
BspCNI	CTCAG	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	277, 352
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	196, 269, 344
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	4 cut(s)	88, 164, 257, 332
BssMI	GATC	4 cut(s)	27, 188, 261, 336
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	259, 334
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	88
BstEII	GGTNACC	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	30, 191, 264, 339
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	4 cut(s)	27, 188, 261, 336
BstNI	CCWGG	2 cut(s)	259, 334
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	173, 257, 332
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	5 cut(s)	49, 135, 176, 240, 315
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	71, 178
BtgI	CCRYGG	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	19, 69
Cfr42I	CCGCGG	1 cut(s)	91
CpoI	CGGWCCG	1 cut(s)	19
CseI	GACGC	1 cut(s)	290
CspI	CGGWCCG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	71, 79, 93, 178, 276, 351
CviKI_1	RGCY	6 cut(s)	71, 79, 93, 178, 276, 351
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	29, 190, 263, 338
DpnII	GATC	4 cut(s)	27, 188, 261, 336
DrdI	GACNNNNNNGTC	2 cut(s)	53, 80
DseDI	GACNNNNNNGTC	2 cut(s)	53, 80
EaeI	YGGCCR	1 cut(s)	176
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	3 cut(s)	81, 278, 353
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	263
Eco91I	GGTNACC	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	257, 332
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	3 cut(s)	81, 278, 353
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	88
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	2 cut(s)	23, 196
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	91
FriOI	GRGCYC	3 cut(s)	81, 278, 353
Fsp4HI	GCNGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	71, 178
HapII	CCGG	3 cut(s)	22, 175, 224
HgaI	GACGC	1 cut(s)	290
HinfI	GANTC	4 cut(s)	14, 140, 183, 267
HpaII	CCGG	3 cut(s)	22, 175, 224
HphI	GGTGA	3 cut(s)	230, 243, 318
Hpy188I	TCNGA	8 cut(s)	19, 46, 188, 205, 266, 280, 341, 355
Hpy188III	TCNNGA	2 cut(s)	31, 192
Hpy99I	CGWCG	4 cut(s)	77, 151, 157, 284
HpyF3I	CTNAG	1 cut(s)	204
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	27, 188, 261, 336
LmnI	GCTCC	4 cut(s)	281, 289, 356, 364
LweI	GCATC	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	158, 236
MalI	GATC	4 cut(s)	29, 190, 263, 338
MboI	GATC	4 cut(s)	27, 188, 261, 336
MboII	GAAGA	6 cut(s)	49, 88, 135, 181, 240, 315
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	3 cut(s)	81, 278, 353
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	303, 311
MroXI	GAANNNNTTC	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	3 cut(s)	22, 175, 224
MspR9I	CCNGG	3 cut(s)	175, 259, 334
MvaI	CCWGG	2 cut(s)	259, 334
MvnI	CGCG	1 cut(s)	90
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	4 cut(s)	27, 188, 261, 336
NlaIV	GGNNCC	2 cut(s)	277, 352
NmuCI	GTSAC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	14, 183, 267
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	257, 332
PspEI	GGTNACC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	257, 332
PspN4I	GGNNCC	2 cut(s)	277, 352
PspPI	GGNCC	2 cut(s)	19, 69
PsuI	RGATCY	1 cut(s)	27
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	81
SacII	CCGCGG	1 cut(s)	91
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	4 cut(s)	27, 188, 261, 336
Sau96I	GGNCC	2 cut(s)	19, 69
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	175, 259, 334
SduI	GDGCHC	3 cut(s)	81, 278, 353
SfaNI	GCATC	1 cut(s)	346
Sfr303I	CCGCGG	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	7 cut(s)	88, 90, 106, 114, 221, 254, 329
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	173, 257, 332
StyI	CCWWGG	1 cut(s)	164
TaqI	TCGA	2 cut(s)	38, 191
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	14, 183, 267
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspRI	CASTG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.