Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Forward (+)

50432547 .. 50432974

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003592

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTGGGTATATCATCCCTTCTTTTGCCTGGCTGGTTCGTGGGCGGCGGTGGTGGGGGTGCTCTCTGGTATGCCCATCTTACTTTTCTATATGGTTTTCTTCGCGGTCCAAGGATCGTGATGGAGGCTAGTTGTTGGCTGACTCCAGCGTCGTCTCGTTTGGGAGATAGTCTGGTGGCTGATGGAATTGATTGTGGAATCGACGGAGGTCGTAGGGTTGATTTTCGACGCTGGGCATGGGCTGTACTTGAAAGGGATGCCGGCAGAGGTTTTGGGGTGGAAGACCAGATATCTATGGTGACGGAGGTCGACGGCGGGGTACGACCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.82

Weight (kDa)

5.04

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	45, 48, 105, 315
AclWI	GGATC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	246, 321
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	64
BccI	CCATC	3 cut(s)	84, 115, 176
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	247
BoxI	GACNNNNGTC	2 cut(s)	207, 305
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	325
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	14, 262
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	326
BsiEI	CGRYCG	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	261, 326
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	4 cut(s)	45, 48, 105, 315
BspFNI	CGCG	1 cut(s)	105
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	14, 262
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	30
BstPAI	GACNNNNGTC	2 cut(s)	207, 305
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	14, 262
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	2 cut(s)	138, 237
Csp6I	GTAC	2 cut(s)	245, 320
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	5 cut(s)	33, 128, 139, 179, 242
CviKI_1	RGCY	5 cut(s)	33, 128, 139, 179, 242
CviQI	GTAC	2 cut(s)	245, 320
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	240
FaiI	YATR	6 cut(s)	11, 72, 91, 93, 238, 296
FatI	CATG	1 cut(s)	236
FauI	CCCGC	1 cut(s)	308
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	129
HapII	CCGG	2 cut(s)	261, 326
HgaI	GACGC	2 cut(s)	138, 237
Hin1II	CATG	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	142, 198
HpaII	CCGG	2 cut(s)	261, 326
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	4 cut(s)	154, 206, 231, 314
HpyAV	CCTTC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	15, 19, 42, 52, 158, 159, 217, 274, 299
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	2 cut(s)	92, 293
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	118, 200, 260, 298
MroNI	GCCGGC	1 cut(s)	260
MspI	CCGG	2 cut(s)	261, 326
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	105
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PshAI	GACNNNNGTC	2 cut(s)	207, 305
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	2 cut(s)	246, 321
RsaNI	GTAC	2 cut(s)	245, 320
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	3 cut(s)	211, 271, 309
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	4 cut(s)	45, 48, 105, 315
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	3 cut(s)	201, 226, 309
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	298
TspGWI	ACGGA	2 cut(s)	219, 317
VpaK11BI	GGWCC	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.