RchiOBHm_Chr7g0233151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000783
Physical Location & Seq
Forward (+)
57536213 .. 57536875
663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20897

Sequence Viewer

Length: 660 bp
ATGATGGATCTGCTCTTGATCTGTCGATTGATAGTGGCGGTAGTGACCGACGCGGCGGCCAGATTGCTTCTATTGGAGGTGGTAGGGCTTGGTGGCGGGGCTGTGTGCATCCGAATGAAGAATCTAGGTGAGCTTCTGGCTTCGTCTTATTCTCCTTTTCTTTCCGACGATGGTAGTGGTGCATATTTTAGGGCAGGTGCAATGGGCTGCCTTTGGTTCATGACGGCGAAGGATCTAATCTTCGATGGTGGGGGTGGTACTTTGTCTAGAGGCGGCGAAGGCTTCTGGTTGAAATCTGACCCCCTTGAAAATGGGGTAGAAGGTGGAGGTGCAGTGATGCTACTCGCTGTACTTGAAAGGGATGCCGGCGGAGGTTCTGGGGTGGAAGATCGGAGATCTACGGTGACGGAGGTCAACTACCGCTTACGATCTGAGTGGGTTGCCTTGTCTCCTTGCTGGGCAGATTGCTTTTGGGATCCTTGCTTTGGGCTTTCTGGACTAGGGTTGACAGGATGGGCTTTGTCCCATGACTGGCAGTGGGTAGGCTGGGTCTTAAGCTTGTTCAAGGCCTGGTCTGTCTTTGGAATGGGGGTGGAGGGTGATTTCTCACTTTCTAGTTCCTCTATGAATAGGGTCTCTATGGCCCATATCATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.4

Weight (kDa)

4.69

Isoelectric Point (pI)

28.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 185
AccII CGCG 1 cut(s) 53
AciI CCGC 7 cut(s) 38, 53, 56, 96, 273, 369, 421
AclWI GGATC 4 cut(s) 15, 240, 470, 483
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 2 cut(s) 259, 351
AfiI CCNNNNNNNGG 2 cut(s) 485, 531
AflII CTTAAG 1 cut(s) 553
AgsI TTSAA 4 cut(s) 292, 308, 356, 565
AjnI CCWGG 1 cut(s) 569
AluBI AGCT 2 cut(s) 133, 558
AluI AGCT 2 cut(s) 133, 558
Alw26I GTCTC 2 cut(s) 453, 640
AlwI GGATC 4 cut(s) 15, 240, 470, 483
AoxI GGCC 3 cut(s) 57, 567, 642
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 643
AsuHPI GGTGA 3 cut(s) 140, 415, 611
BamHI GGATCC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 194
BccI CCATC 3 cut(s) 164, 239, 507
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 571
BcoDI GTCTC 2 cut(s) 453, 640
BfaI CTAG 4 cut(s) 125, 267, 500, 615
BfrI CTTAAG 1 cut(s) 553
BfuAI ACCTGC 1 cut(s) 185
BglII AGATCT 1 cut(s) 395
BisI GCNGC 4 cut(s) 54, 57, 208, 274
BlsI GCNGC 4 cut(s) 55, 58, 209, 275
Bme1390I CCNGG 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 643
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 3 cut(s) 117, 327, 352
BoxI GACNNNNGTC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 531
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 571
BseGI GGATG 3 cut(s) 108, 367, 518
BseLI CCNNNNNNNGG 2 cut(s) 485, 531
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 536
BseXI GCAGC 1 cut(s) 194
BseYI CCCAGC 2 cut(s) 456, 546
BsgI GTGCAG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 3 cut(s) 59, 569, 644
BsiSI CCGG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 508
BslI CCNNNNNNNGG 2 cut(s) 485, 531
BsmAI GTCTC 2 cut(s) 453, 640
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 3 cut(s) 59, 569, 644
Bso31I GGTCTC 1 cut(s) 640
Bsp143I GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
BspACI CCGC 7 cut(s) 38, 53, 56, 96, 273, 369, 421
BspANI GGCC 3 cut(s) 59, 569, 644
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 4 cut(s) 15, 240, 470, 483
BspTI CTTAAG 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 640
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 365
BssMI GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 403
BstAFI CTTAAG 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 108, 367, 518
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 7 cut(s) 10, 21, 235, 391, 398, 431, 478
BstMAI GTCTC 2 cut(s) 453, 640
BstMBI GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 571
BstPAI GACNNNNGTC 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 569
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 4 cut(s) 7, 232, 395, 475
BstYI RGATCY 4 cut(s) 7, 232, 395, 475
BsuRI GGCC 3 cut(s) 59, 569, 644
BtsCI GGATG 3 cut(s) 108, 367, 518
BtsI GCAGTG 2 cut(s) 339, 542
BtsIMutI CAGTG 2 cut(s) 339, 542
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 367
CciI TCATGA 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 643
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 258, 350
CviAII CATG 2 cut(s) 220, 527
CviQI GTAC 2 cut(s) 258, 350
DdeI CTNAG 1 cut(s) 432
DpnI GATC 7 cut(s) 9, 20, 234, 390, 397, 430, 477
DpnII GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
EaeI YGGCCR 1 cut(s) 57
EciI GGCGGA 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 569
Eco31I GGTCTC 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 569
FaeI CATG 2 cut(s) 223, 530
FaiI YATR 6 cut(s) 184, 221, 528, 626, 641, 648
FaqI GGGAC 1 cut(s) 508
FatI CATG 2 cut(s) 219, 526
FauI CCCGC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 54, 57, 208, 274
FokI GGATG 3 cut(s) 95, 374, 525
Fsp4HI GCNGC 4 cut(s) 54, 57, 208, 274
FspBI CTAG 4 cut(s) 125, 267, 500, 615
GluI GCNGC 4 cut(s) 54, 57, 208, 274
GsaI CCCAGC 2 cut(s) 460, 550
HaeIII GGCC 3 cut(s) 59, 569, 644
HapII CCGG 1 cut(s) 366
HgaI GACGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 223, 530
HincII GTYRAC 2 cut(s) 415, 507
HindII GTYRAC 2 cut(s) 415, 507
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 366
HphI GGTGA 3 cut(s) 140, 415, 611
Hpy166II GTNNAC 2 cut(s) 415, 507
Hpy188I TCNGA 5 cut(s) 113, 166, 298, 393, 433
Hpy188III TCNNGA 4 cut(s) 16, 220, 267, 495
Hpy8I GTNNAC 2 cut(s) 415, 507
Hpy99I CGWCG 2 cut(s) 53, 170
HpyAV CCTTC 3 cut(s) 223, 272, 314
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 108, 182, 200, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 1 cut(s) 432
Hsp92II CATG 2 cut(s) 223, 530
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 117, 327, 352
MaeI CTAG 4 cut(s) 125, 267, 500, 615
MaeIII GTNAC 2 cut(s) 43, 403
MalI GATC 7 cut(s) 9, 20, 234, 390, 397, 430, 477
MboI GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
MboII GAAGA 3 cut(s) 130, 232, 398
MflI RGATCY 4 cut(s) 7, 232, 395, 475
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 7 cut(s) 70, 263, 320, 365, 403, 589, 631
MroNI GCCGGC 1 cut(s) 365
MseI TTAA 2 cut(s) 554, 658
MslI CAYNNNNRTG 1 cut(s) 113
MspCI CTTAAG 1 cut(s) 553
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 279
NaeI GCCGGC 1 cut(s) 367
NdeII GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 2 cut(s) 223, 530
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 43, 403
PagI TCATGA 1 cut(s) 219
PaqCI CACCTGC 1 cut(s) 185
PceI AGGCCT 1 cut(s) 569
PdiI GCCGGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 55, 58, 209, 275
PshAI GACNNNNGTC 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 2 cut(s) 456, 546
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 643
PsuI RGATCY 4 cut(s) 7, 232, 395, 475
RsaI GTAC 2 cut(s) 259, 351
RsaNI GTAC 2 cut(s) 258, 350
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 554, 658
SatI GCNGC 4 cut(s) 54, 57, 208, 274
Sau3AI GATC 7 cut(s) 7, 18, 232, 388, 395, 428, 475
Sau96I GGNCC 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 571
SetI ASST 9 cut(s) 81, 130, 135, 199, 325, 331, 376, 414, 560
SfaNI GCATC 3 cut(s) 117, 327, 352
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 7 cut(s) 38, 53, 56, 96, 273, 369, 421
SspMI CTAG 4 cut(s) 125, 267, 500, 615
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 569
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 2 cut(s) 25, 243
TaqII GACCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 349
TauI GCSGC 3 cut(s) 56, 59, 276
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 2 cut(s) 554, 658
Tru9I TTAA 2 cut(s) 554, 658
TscAI CASTG 2 cut(s) 339, 542
TseFI GTSAC 2 cut(s) 43, 403
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 2 cut(s) 43, 403
TspDTI ATGAA 3 cut(s) 131, 208, 641
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 339, 542
Vha464I CTTAAG 1 cut(s) 553
XbaI TCTAGA 1 cut(s) 266
XspI CTAG 4 cut(s) 125, 267, 500, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.