Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

28450867 .. 28453160

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGACGGAGTCTCGGGTCTTCGATGGTGGAGGCGGATTTTTGCCTTGGGTTGCTGGCATAGGGGCCGTGCTGGTGGCCACCGGTGACGCTTGGGACGGAGTTGGAGGATGCACAGCGGTCAGCAGTGGTGGGGACAACTGTGAGGAAGCTGGAGGCCGCGACAAAGCTTGGGCGGCGGCTGATGTGTGGAAGCTTGGCATTGTGCTCCTGGGGTTTGAAGAAGTGGAGGACATGATTATTAAGGGTATGCCTTATGTGGCTGGCGAAGTTCCTTTCTTCATCCTAAGACGGATGGGAAAGAGTTCTACACCTGCCTCTGATACCGTTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.67

Weight (kDa)

4.39

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	1 cut(s)	162
AciI	CCGC	5 cut(s)	36, 119, 160, 176, 179
AcoI	YGGCCR	1 cut(s)	78
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	221, 332
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	152, 170, 196
AluI	AGCT	3 cut(s)	152, 170, 196
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	18
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	3 cut(s)	66, 78, 157
AsiGI	ACCGGT	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	15
BalI	TGGCCA	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	2 cut(s)	20, 289
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	160, 177, 180
BlsI	GCNGC	3 cut(s)	161, 178, 181
Bme1390I	CCNGG	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	47, 211
BsaWI	WCCGGW	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	47, 211
BseGI	GGATG	3 cut(s)	116, 282, 300
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	3 cut(s)	68, 80, 159
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	110, 149
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	2 cut(s)	110, 149
BsnI	GGCC	3 cut(s)	68, 80, 159
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	210
BspACI	CCGC	5 cut(s)	36, 119, 160, 176, 179
BspANI	GGCC	3 cut(s)	68, 80, 159
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	322
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	47, 211
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	143, 328
BstC8I	GCNNGC	2 cut(s)	58, 265
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	116, 282, 300
BstFNI	CGCG	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	13
BsuRI	GGCC	3 cut(s)	68, 80, 159
BtsCI	GGATG	3 cut(s)	116, 282, 300
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	58, 265
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	98
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	8 cut(s)	68, 80, 152, 159, 170, 182, 196, 263
CviKI_1	RGCY	8 cut(s)	68, 80, 152, 159, 170, 182, 196, 263
DdeI	CTNAG	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	238
FaiI	YATR	4 cut(s)	62, 236, 251, 258
FaqI	GGGAC	2 cut(s)	110, 149
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	160, 177, 180
FokI	GGATG	3 cut(s)	123, 269, 307
Fsp4HI	GCNGC	3 cut(s)	160, 177, 180
GluI	GCNGC	3 cut(s)	160, 177, 180
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	68, 80, 159
HapII	CCGG	1 cut(s)	84
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	168, 194
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	322
HpyCH4III	ACNGT	2 cut(s)	143, 328
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	8 cut(s)	42, 59, 97, 138, 197, 224, 249, 327
LweI	GCATC	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	13, 233, 271
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	6 cut(s)	26, 101, 139, 149, 223, 328
Mox20I	TGGCCA	1 cut(s)	80
MroXI	GAANNNNTTC	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	86
PaqCI	CACCTGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	10
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	3 cut(s)	161, 178, 181
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	160, 177, 180
Sau96I	GGNCC	1 cut(s)	66
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	154, 172, 198, 316
SfaNI	GCATC	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	83
SsiI	CCGC	5 cut(s)	36, 119, 160, 176, 179
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	143, 328
TaqI	TCGA	1 cut(s)	24
TauI	GCSGC	3 cut(s)	162, 179, 182
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	3 cut(s)	23, 114, 307
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.