RLG00000027840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000783
Physical Location & Seq
Forward (+)
15881993 .. 15883574
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027840

Sequence Viewer

Length: 615 bp
ATGACTTTGACTCTCTCTCGAGAGAGAGAGACATATCGTCGTTTCGCCTCCTCGGGGAGCGGCGGCGACAAAATTTATCGCTTGCTTCTCCATTCTTATGGTGGCGGCGACAAATCTCTTCGTCCATCTCTATCTTCGGTTAGTGGCGGCGATGTTGCGGATGTTGGTGGGATTGGGATTAGAACTTTGATTGTTCAGATCTGGTTTGGTGGATCTCTTGATAGTGCGAAAGGATCTGCTCTTGATCCGTCGATCGATGGGGATGGTAGCGAGTGGCGCGGTGGCCAGATTGATTCCATTAGAGATGGTGGTGCTTGGTGGCGGGGATGTGTGTGTCCGAATTGGTGGGCTGATGGTTTCGTTTTCTTCTCAAATTCCTCGTTGTGTTCCAATGGTGGTAGTGGTGCAGATCTCGGGGTAGGTCCAACTGGCTGTCTTTGGCTCATGTTGGCACAGTATCTGGTCTTCGATGGCGGAGGAGGTAGTTTGCCTCGAGCTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAACAGTGGCTATGGCAATGGCCAATGTAGTGCCATCTCTGAGTGACTGTTGGATCTTGCCAACGATGAAGGTGCTTGTTGTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

21.41

Weight (kDa)

5.28

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 279
AciI CCGC 8 cut(s) 60, 63, 105, 147, 158, 279, 322, 474
AclWI GGATC 4 cut(s) 220, 239, 241, 587
AcoI YGGCCR 2 cut(s) 283, 546
AcsI RAATTY 2 cut(s) 72, 373
AcuI CTGAAG 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 54, 497
AhdI GACNNNNNGTC 1 cut(s) 36
AjiI CACGTC 1 cut(s) 513
AluBI AGCT 1 cut(s) 497
AluI AGCT 1 cut(s) 497
Alw26I GTCTC 2 cut(s) 23, 506
AlwI GGATC 4 cut(s) 220, 239, 241, 587
AlwNI CAGNNNCTG 1 cut(s) 460
Ama87I CYCGRG 4 cut(s) 18, 52, 413, 492
AoxI GGCC 2 cut(s) 283, 546
ApoI RAATTY 2 cut(s) 72, 373
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 422
AvaI CYCGRG 4 cut(s) 18, 52, 413, 492
AvaII GGWCC 1 cut(s) 422
BalI TGGCCA 2 cut(s) 285, 548
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbsI GAAGAC 2 cut(s) 457, 510
BccI CCATC 7 cut(s) 133, 251, 257, 299, 347, 464, 568
BcgI CGANNNNNNTGC 2 cut(s) 580, 614
BcoDI GTCTC 2 cut(s) 23, 506
BglII AGATCT 2 cut(s) 198, 409
BisI GCNGC 4 cut(s) 61, 64, 106, 148
BlsI GCNGC 4 cut(s) 62, 65, 107, 149
Bme18I GGWCC 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 36
BmeT110I CYCGRG 4 cut(s) 18, 52, 413, 492
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 457, 510
BplI GAGNNNNNCTC 2 cut(s) 486, 518
Bsa29I ATCGAT 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 497
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 166, 268, 332
BseLI CCNNNNNNNGG 2 cut(s) 54, 497
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 40, 492
BsgI GTGCAG 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 285, 548
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 1 cut(s) 255
BsiHKCI CYCGRG 4 cut(s) 18, 52, 413, 492
BslI CCNNNNNNNGG 2 cut(s) 54, 497
BsmAI GTCTC 2 cut(s) 23, 506
BsnI GGCC 2 cut(s) 285, 548
Bso31I GGTCTC 1 cut(s) 506
BsoBI CYCGRG 4 cut(s) 18, 52, 413, 492
Bsp143I GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
BspACI CCGC 8 cut(s) 60, 63, 105, 147, 158, 279, 322, 474
BspANI GGCC 2 cut(s) 285, 548
BspCNI CTCAG 1 cut(s) 558
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 1 cut(s) 279
BspPI GGATC 4 cut(s) 220, 239, 241, 587
BspTNI GGTCTC 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
Bst4CI ACNGT 3 cut(s) 456, 532, 575
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 566
BstF5I GGATG 3 cut(s) 166, 268, 332
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 7 cut(s) 201, 215, 236, 247, 255, 412, 582
BstMAI GTCTC 2 cut(s) 23, 506
BstMBI GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 276, 607
BstUI CGCG 1 cut(s) 279
BstV2I GAAGAC 2 cut(s) 457, 510
BstX2I RGATCY 5 cut(s) 198, 212, 233, 409, 579
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 5 cut(s) 198, 212, 233, 409, 579
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 2 cut(s) 285, 548
BsuTUI ATCGAT 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 513
BtsCI GGATG 3 cut(s) 166, 268, 332
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 83
CaiI CAGNNNCTG 1 cut(s) 460
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 422
ClaI ATCGAT 1 cut(s) 255
CviAII CATG 1 cut(s) 445
CviJI RGCY 7 cut(s) 285, 350, 432, 442, 497, 536, 548
CviKI_1 RGCY 7 cut(s) 285, 350, 432, 442, 497, 536, 548
DdeI CTNAG 1 cut(s) 566
DpnI GATC 7 cut(s) 200, 214, 235, 246, 254, 411, 581
DpnII GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
DriI GACNNNNNGTC 1 cut(s) 36
EaeI YGGCCR 2 cut(s) 283, 546
Eam1104I CTCTTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 4 cut(s) 18, 52, 413, 492
FaeI CATG 1 cut(s) 448
FaiI YATR 4 cut(s) 34, 99, 446, 539
FatI CATG 1 cut(s) 444
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 4 cut(s) 61, 64, 106, 148
FokI GGATG 3 cut(s) 173, 275, 339
Fsp4HI GCNGC 4 cut(s) 61, 64, 106, 148
GlaI GCGC 1 cut(s) 278
GluI GCNGC 4 cut(s) 61, 64, 106, 148
HaeIII GGCC 2 cut(s) 285, 548
HhaI GCGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 448
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 2 cut(s) 10, 293
Hpy188I TCNGA 3 cut(s) 198, 339, 567
Hpy188III TCNNGA 4 cut(s) 18, 20, 218, 242
Hpy99I CGWCG 2 cut(s) 42, 253
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 456, 532, 575
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 607
HpyF3I CTNAG 1 cut(s) 566
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 1 cut(s) 448
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 187, 299, 414, 446, 483
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 1 cut(s) 569
MalI GATC 7 cut(s) 200, 214, 235, 246, 254, 411, 581
MbiI CCGCTC 1 cut(s) 60
MboI GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
MboII GAAGA 5 cut(s) 110, 126, 358, 457, 510
MflI RGATCY 5 cut(s) 198, 212, 233, 409, 579
MlsI TGGCCA 2 cut(s) 285, 548
MluCI AATT 3 cut(s) 72, 340, 373
MluNI TGGCCA 2 cut(s) 285, 548
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 3 cut(s) 449, 551, 557
MnlI CCTC 6 cut(s) 58, 61, 388, 470, 473, 501
Mox20I TGGCCA 2 cut(s) 285, 548
MscI TGGCCA 2 cut(s) 285, 548
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 2 cut(s) 285, 548
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 276, 607
NdeII GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
NlaIII CATG 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 569
PaeR7I CTCGAG 2 cut(s) 18, 492
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 514
PkrI GCNGC 4 cut(s) 62, 65, 107, 149
Ple19I CGATCG 1 cut(s) 255
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PspPI GGNCC 1 cut(s) 422
PspXI VCTCGAGB 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 5 cut(s) 198, 212, 233, 409, 579
PsyI GACNNNGTC 1 cut(s) 514
PvuI CGATCG 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 96
SatI GCNGC 4 cut(s) 61, 64, 106, 148
Sau3AI GATC 7 cut(s) 198, 212, 233, 244, 252, 409, 579
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 1 cut(s) 4
SetI ASST 5 cut(s) 424, 484, 499, 515, 600
Sfr274I CTCGAG 2 cut(s) 18, 492
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 2 cut(s) 18, 492
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 18, 492
SmoI CTYRAG 2 cut(s) 18, 492
Sse9I AATT 3 cut(s) 72, 340, 373
SsiI CCGC 8 cut(s) 60, 63, 105, 147, 158, 279, 322, 474
TaaI ACNGT 3 cut(s) 456, 532, 575
TaiI ACGT 1 cut(s) 515
TaqI TCGA 5 cut(s) 19, 251, 255, 468, 493
TasI AATT 3 cut(s) 72, 340, 373
TauI GCSGC 4 cut(s) 63, 66, 108, 150
TfiI GAWTC 1 cut(s) 293
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 1 cut(s) 608
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 1 cut(s) 537
Tth111I GACNNNGTC 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 2 cut(s) 72, 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XhoI CTCGAG 2 cut(s) 18, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.