Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

43319328 .. 43330291

Gene Structure 10964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTGGATACTGGTCATAGGCTGCTTTCGATGTCGTCCTGTAGGGGAGACAATCTGGTGGTGGATGGTTTTGATTGCGGAACCGACGGGGGTAGTCGAGGCTGGAATGTTGGTAAGACCAGATCTCGGGTGTCGGAGGTGGCTCCGAAGCGAGGAGCCGTGGTGACCAATTGTGCTAAGCCTCCGTCTTCAGTGCTTGCAGAGTTTTGGCGCTGGGCATGTGCTGCACTTGATAGAGGCACCGATGCCGGTGCTGGCTTTGGTGGCTGGAGATCTGAGATGAAAGAGATCGGCGATGGCATAAGTGGACAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.08

Weight (kDa)

6.56

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	126, 152
Alw26I	GTCTC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	22, 224
AspLEI	GCGC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	126
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	9, 211
BccI	CCATC	2 cut(s)	59, 290
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	40
BfoI	RGCGCY	1 cut(s)	214
BglII	AGATCT	2 cut(s)	122, 272
BisI	GCNGC	2 cut(s)	23, 225
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	24, 226
BmeT110I	CYCGRG	1 cut(s)	126
BmiI	GGNNCC	4 cut(s)	82, 144, 157, 241
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	289
Bpu1102I	GCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 152
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	126, 152
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	9, 211
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	126, 152
BsmAI	GTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	122, 272, 288
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	4 cut(s)	82, 144, 157, 241
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	122, 272, 288
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	198, 256
BstDEI	CTNAG	2 cut(s)	177, 276
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	125, 275, 291
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	122, 272, 288
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 264
BstNSI	RCATGY	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	9, 211
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	122, 272
BstYI	RGATCY	2 cut(s)	122, 272
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	198, 256
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	248
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	7 cut(s)	22, 102, 143, 158, 181, 258, 267
CviKI_1	RGCY	7 cut(s)	22, 102, 143, 158, 181, 258, 267
DdeI	CTNAG	2 cut(s)	177, 276
DpnI	GATC	3 cut(s)	124, 274, 290
DpnII	GATC	3 cut(s)	122, 272, 288
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	163
FaeI	CATG	1 cut(s)	222
FaiI	YATR	3 cut(s)	18, 220, 302
FatI	CATG	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	23, 225
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	23, 225
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	23, 225
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	214
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	136, 147, 277
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	200, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 264
HpyF3I	CTNAG	2 cut(s)	177, 276
Hsp92II	CATG	1 cut(s)	222
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	122, 272, 288
LmnI	GCTCC	2 cut(s)	148, 155
LpnPI	CCDG	8 cut(s)	41, 52, 88, 133, 199, 240, 253, 262
Lsp1109I	GCAGC	2 cut(s)	9, 211
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	124, 274, 290
MboI	GATC	3 cut(s)	122, 272, 288
MboII	GAAGA	1 cut(s)	180
MfeI	CAATTG	1 cut(s)	169
MflI	RGATCY	2 cut(s)	122, 272
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	5 cut(s)	92, 130, 146, 192, 230
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	224, 264
NdeII	GATC	3 cut(s)	122, 272, 288
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	4 cut(s)	82, 144, 157, 241
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	24, 226
PspEI	GGTNACC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	82, 144, 157, 241
PsuI	RGATCY	2 cut(s)	122, 272
SatI	GCNGC	2 cut(s)	23, 225
Sau3AI	GATC	3 cut(s)	122, 272, 288
SetI	ASST	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	78
TaqI	TCGA	2 cut(s)	29, 97
TasI	AATT	1 cut(s)	169
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	2 cut(s)	22, 224
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	198
XceI	RCATGY	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.