Rh6DG255800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000783
Physical Location & Seq
Forward (+)
44637963 .. 44638205
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG255800.1

Sequence Viewer

Length: 243 bp
ATGGTGGCGGATCGTGCTGAGGTTCCCTTGACAGTGCTTGCAGAGTTTCGGCCCTGGGCATGGGTTGCACTTGATAGAGACACCCGCGGTAGTGTTGGCTTATGTGGCTGGAGATTGGCGATGAAGGAGGTCAAAGATGGCGTCCAATCTAATTGGGCAGCTTTGTCTTCCTACTGGGCAGACTATTTTTGGGGCTCCTTGCTTTGGGCTCTCCTAGCTAGGGCTTCACAGGGGTGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.12

Weight (kDa)

7.92

Isoelectric Point (pI)

9.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 3 cut(s) 8, 85, 87
AclWI GGATC 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 60, 204, 220
AjnI CCWGG 1 cut(s) 53
AleI CACNNNNGTG 1 cut(s) 232
AluBI AGCT 2 cut(s) 161, 218
AluI AGCT 2 cut(s) 161, 218
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspS9I GGNCC 1 cut(s) 51
BanII GRGCYC 2 cut(s) 197, 211
BbsI GAAGAC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 2 cut(s) 215, 219
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 24, 196
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 53, 54, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 204, 220
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 3 cut(s) 53, 54, 85
BseLI CCNNNNNNNGG 3 cut(s) 60, 204, 220
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 60, 204, 220
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 2 cut(s) 197, 211
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 3 cut(s) 8, 85, 87
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 24, 196
BspPI GGATC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 53, 54, 85
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 14, 65, 105, 215
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 51
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 1 cut(s) 130
CviAII CATG 1 cut(s) 60
CviJI RGCY 8 cut(s) 52, 99, 108, 161, 195, 209, 218, 224
CviKI_1 RGCY 8 cut(s) 52, 99, 108, 161, 195, 209, 218, 224
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 23
Eco24I GRGCYC 2 cut(s) 197, 211
EcoRII CCWGG 1 cut(s) 53
EcoT38I GRGCYC 2 cut(s) 197, 211
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 103
FatI CATG 1 cut(s) 59
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 159
FriOI GRGCYC 2 cut(s) 197, 211
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 215, 219
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 52
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 41, 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 65, 105, 215
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 63
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 40, 67, 94, 160, 215
Lsp1109I GCAGC 1 cut(s) 170
MaeI CTAG 2 cut(s) 215, 219
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 197, 211
MluCI AATT 1 cut(s) 151
MnlI CCTC 3 cut(s) 13, 121, 231
MslI CAYNNNNRTG 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 14, 65, 105, 215
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 24, 196
OliI CACNNNNGTG 1 cut(s) 232
PasI CCCWGGG 1 cut(s) 54
PkrI GCNGC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 24, 196
PspPI GGNCC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 232
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 197, 211
SetI ASST 5 cut(s) 24, 132, 163, 220, 242
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 232
Sse9I AATT 1 cut(s) 151
SsiI CCGC 3 cut(s) 8, 85, 87
SspMI CTAG 2 cut(s) 215, 219
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 34
TasI AATT 1 cut(s) 151
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 137
TspRI CASTG 1 cut(s) 39
XspI CTAG 2 cut(s) 215, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.