AT4G13010

quinone-oxidoreductase homolog, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000313
Physical Location & Seq
Forward (+)
7600510 .. 7602754
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13010.1

Sequence Viewer

Length: 990 bp
ATGGCTGGAAAACTCATGCACGCTCTTCAGTACAACTCTTACGGTGGTGGCGCCGCCGGATTAGAGCATGTTCAAGTTCCGGTTCCAACACCAAAGAGTAATGAGGTTTGCCTGAAATTAGAAGCTACTAGTCTAAACCCTGTTGATTGGAAAATTCAGAAAGGAATGATCCGCCCATTTCTGCCCCGCAAGTTCCCCTGCATTCCAGCTACTGATGTTGCTGGAGAGGTCGTTGAGGTTGGATCAGGAGTAAAAAATTTTAAGGCTGGTGACAAAGTTGTAGCGGTTCTTAGCCATCTAGGTGGAGGTGGACTTGCTGAGTTCGCTGTTGCAACCGAGAAGCTGACTGTCAAAAGACCTCAAGAAGTGGGAGCAGCTGAAGCAGCAGCTTTACCTGTGGCGGGTCTAACCGCTCTCCAAGCTCTTACTAATCCTGCGGGGTTGAAGCTGGATGGTACAGGCAAGAAGGCGAACATCCTGGTCACAGCAGCATCTGGTGGGGTTGGTCACTATGCAGTCCAGCTGGCAAAACTTGCAAATGCTCACGTAACCGCTACATGTGGTGCCCGGAACATAGAGTTTGTCAAATCGTTGGGAGCGGATGAGGTTCTCGACTACAAGACTCCCGAGGGAGCCGCCCTCAAGAGTCCGTCGGGTAAAAAATATGACGCTGTGGTCCATTGTGCAAACGGGATTCCATTTTCGGTATTCGAACCAAATTTGTCGGAAAACGGGAAGGTGATAGACATCACACCGGGGCCTAATGCAATGTGGACTTATGCGGTTAAGAAAATAACCATGTCAAAGAAGCAGTTAGTGCCACTCTTGTTGATCCCAAAAGCTGAGAATTTGGAGTTTATGGTGAATCTAGTGAAAGAAGGGAAAGTGAAGACAGTGATTGACTCAAAGCATCCTTTGAGCAAAGCGGAGGATGCTTGGGCCAAAAGTATCGATGGTCATGCTACTGGGAAGATCATTGTCGAGCCATAA

Protein Analysis

329

Amino Acids

34.44

Weight (kDa)

9.05

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 120 2.6e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 232 2.2e-11 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 2.9e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AccB1I GGYRCC 2 cut(s) 50, 563
AccBSI CCGCTC 2 cut(s) 413, 599
AclWI GGATC 3 cut(s) 163, 250, 826
AcsI RAATTY 4 cut(s) 153, 256, 718, 847
AcuI CTGAAG 2 cut(s) 11, 399
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 32, 457
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 74, 445
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 9 cut(s) 125, 209, 343, 377, 389, 422, 448, 523, 842
AluI AGCT 9 cut(s) 125, 209, 343, 377, 389, 422, 448, 523, 842
AlwI GGATC 3 cut(s) 163, 250, 826
AlwNI CAGNNNCTG 2 cut(s) 212, 494
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 2 cut(s) 758, 939
ApeKI GCWGC 4 cut(s) 374, 383, 386, 488
ApoI RAATTY 4 cut(s) 153, 256, 718, 847
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 676, 758, 939
AsuC2I CCSGG 2 cut(s) 568, 756
AsuHPI GGTGA 3 cut(s) 281, 751, 874
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 1 cut(s) 676
BaeGI GKGCMC 1 cut(s) 568
BanI GGYRCC 2 cut(s) 50, 563
BbsI GAAGAC 1 cut(s) 896
BbvI GCAGC 4 cut(s) 386, 395, 398, 500
BccI CCATC 3 cut(s) 303, 446, 947
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 1 cut(s) 479
BcnI CCSGG 2 cut(s) 568, 756
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 299, 869
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 6 cut(s) 54, 375, 384, 387, 489, 636
BlsI GCNGC 6 cut(s) 55, 376, 385, 388, 490, 637
Bme1390I CCNGG 3 cut(s) 479, 568, 756
Bme18I GGWCC 1 cut(s) 676
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 676, 758, 939
BmiI GGNNCC 5 cut(s) 52, 84, 565, 634, 759
BmrFI CCNGG 3 cut(s) 479, 568, 756
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 3 cut(s) 500, 919, 922
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 896
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 345, 626
BpuMI CCSGG 2 cut(s) 568, 756
Bsa29I ATCGAT 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 746
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 627, 755
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 970
Bse3DI GCAATG 1 cut(s) 774
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 627, 755
BseGI GGATG 5 cut(s) 457, 474, 607, 910, 937
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 309, 834
BseNI ACTGG 1 cut(s) 970
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 386, 395, 398, 500
BshFI GGCC 2 cut(s) 760, 941
BshNI GGYRCC 2 cut(s) 50, 563
BshVI ATCGAT 1 cut(s) 951
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 4 cut(s) 57, 80, 568, 755
BslI CCNNNNNNNGG 1 cut(s) 401
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 760, 941
BsoBI CYCGRG 1 cut(s) 626
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 4 cut(s) 168, 242, 831, 972
BspANI GGCC 2 cut(s) 760, 941
BspCNI CTCAG 2 cut(s) 310, 835
BspDI ATCGAT 1 cut(s) 951
BspLI GGNNCC 5 cut(s) 52, 84, 565, 634, 759
BspPI GGATC 3 cut(s) 163, 250, 826
BspQI GCTCTTC 1 cut(s) 30
BspT104I TTCGAA 1 cut(s) 711
BspT107I GGYRCC 2 cut(s) 50, 563
BsrBI CCGCTC 2 cut(s) 413, 599
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 1 cut(s) 970
BssECI CCNNGG 2 cut(s) 627, 755
BssMI GATC 4 cut(s) 168, 242, 831, 972
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 44, 349, 895
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 2 cut(s) 533, 817
BstBAI YACGTR 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 2 cut(s) 21, 525
BstDEI CTNAG 3 cut(s) 290, 318, 843
BstF5I GGATG 5 cut(s) 457, 474, 607, 910, 937
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 171, 245, 834, 975
BstMBI GATC 4 cut(s) 168, 242, 831, 972
BstMWI GCNNNNNNNGC 7 cut(s) 323, 380, 383, 419, 533, 817, 932
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 2 cut(s) 71, 561
BstSCI CCNGG 3 cut(s) 477, 566, 754
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 386, 395, 398, 500
BstV2I GAAGAC 1 cut(s) 896
BstXI CCANNNNNNTGG 1 cut(s) 302
Bsu15I ATCGAT 1 cut(s) 951
BsuRI GGCC 2 cut(s) 760, 941
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 5 cut(s) 457, 474, 607, 910, 937
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 21, 525
CaiI CAGNNNCTG 2 cut(s) 212, 494
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 676, 758, 939
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 1 cut(s) 677
Csp6I GTAC 2 cut(s) 31, 456
CspCI CAANNNNNGTGG 2 cut(s) 810, 845
CviAII CATG 5 cut(s) 16, 68, 558, 799, 959
CviQI GTAC 2 cut(s) 31, 456
DdeI CTNAG 3 cut(s) 290, 318, 843
DinI GGCGCC 1 cut(s) 52
DpnI GATC 4 cut(s) 170, 244, 833, 974
DpnII GATC 4 cut(s) 168, 242, 831, 972
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 676
Eco57I CTGAAG 2 cut(s) 11, 399
Eco88I CYCGRG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 477
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
FaeI CATG 5 cut(s) 19, 71, 561, 802, 962
FatI CATG 5 cut(s) 15, 67, 557, 798, 958
FauI CCCGC 3 cut(s) 194, 394, 430
Fnu4HI GCNGC 6 cut(s) 54, 375, 384, 387, 489, 636
FokI GGATG 5 cut(s) 461, 464, 614, 897, 944
Fsp4HI GCNGC 6 cut(s) 54, 375, 384, 387, 489, 636
FspBI CTAG 3 cut(s) 129, 299, 869
GlaI GCGC 1 cut(s) 52
GluI GCNGC 6 cut(s) 54, 375, 384, 387, 489, 636
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 2 cut(s) 760, 941
HapII CCGG 4 cut(s) 57, 80, 568, 755
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 19, 71, 561, 802, 962
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 5 cut(s) 622, 646, 694, 865, 902
HpaII CCGG 4 cut(s) 57, 80, 568, 755
HphI GGTGA 3 cut(s) 281, 751, 874
Hpy166II GTNNAC 2 cut(s) 311, 774
Hpy188I TCNGA 2 cut(s) 159, 727
Hpy188III TCNNGA 5 cut(s) 246, 362, 611, 626, 643
Hpy8I GTNNAC 2 cut(s) 311, 774
Hpy99I CGWCG 1 cut(s) 655
HpyAV CCTTC 3 cut(s) 460, 730, 872
HpyCH4III ACNGT 3 cut(s) 44, 349, 895
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 7 cut(s) 19, 201, 332, 515, 536, 686, 767
HpyF10VI GCNNNNNNNGC 7 cut(s) 323, 380, 383, 419, 533, 817, 932
HpyF3I CTNAG 3 cut(s) 290, 318, 843
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 19, 71, 561, 802, 962
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 4 cut(s) 168, 242, 831, 972
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 3 cut(s) 371, 596, 632
Lsp1109I GCAGC 4 cut(s) 386, 395, 398, 500
LweI GCATC 3 cut(s) 500, 919, 922
MaeI CTAG 3 cut(s) 129, 299, 869
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 269, 481, 506, 547
MalI GATC 4 cut(s) 170, 244, 833, 974
MbiI CCGCTC 2 cut(s) 413, 599
MboI GATC 4 cut(s) 168, 242, 831, 972
MboII GAAGA 3 cut(s) 17, 901, 982
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 5 cut(s) 116, 153, 256, 718, 847
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 3 cut(s) 616, 655, 896
MmeI TCCRAC 3 cut(s) 110, 220, 705
MnlI CCTC 9 cut(s) 97, 220, 229, 299, 369, 598, 622, 650, 922
MseI TTAA 2 cut(s) 261, 786
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 377, 523
MspI CCGG 4 cut(s) 57, 80, 568, 755
MspR9I CCNGG 3 cut(s) 479, 568, 756
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 7 cut(s) 323, 380, 383, 419, 533, 817, 932
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 2 cut(s) 568, 756
NdeII GATC 4 cut(s) 168, 242, 831, 972
NlaIII CATG 5 cut(s) 19, 71, 561, 802, 962
NlaIV GGNNCC 5 cut(s) 52, 84, 565, 634, 759
NmuCI GTSAC 3 cut(s) 269, 481, 506
NspI RCATGY 2 cut(s) 71, 561
NspV TTCGAA 1 cut(s) 711
PciI ACATGT 1 cut(s) 557
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 694, 865
PkrI GCNGC 6 cut(s) 55, 376, 385, 388, 490, 637
PleI GAGTC 3 cut(s) 616, 654, 896
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 3 cut(s) 616, 654, 896
Ppu21I YACGTR 1 cut(s) 547
PscI ACATGT 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 5 cut(s) 52, 84, 565, 634, 759
PspPI GGNCC 3 cut(s) 676, 758, 939
PstNI CAGNNNCTG 2 cut(s) 212, 494
PvuII CAGCTG 2 cut(s) 377, 523
RsaI GTAC 2 cut(s) 32, 457
RsaNI GTAC 2 cut(s) 31, 456
RseI CAYNNNNRTG 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 261, 786
SatI GCNGC 6 cut(s) 54, 375, 384, 387, 489, 636
Sau3AI GATC 4 cut(s) 168, 242, 831, 972
Sau96I GGNCC 3 cut(s) 676, 758, 939
SchI GAGTC 3 cut(s) 616, 655, 896
ScrFI CCNGG 3 cut(s) 479, 568, 756
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 3 cut(s) 500, 919, 922
SfoI GGCGCC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 1 cut(s) 676
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 360, 641
SmoI CTYRAG 2 cut(s) 360, 641
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 5 cut(s) 116, 153, 256, 718, 847
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 3 cut(s) 129, 299, 869
StyD4I CCNGG 3 cut(s) 477, 566, 754
TaaI ACNGT 3 cut(s) 44, 349, 895
TaiI ACGT 1 cut(s) 549
TaqI TCGA 4 cut(s) 612, 711, 951, 981
TasI AATT 5 cut(s) 116, 153, 256, 718, 847
TatI WGTACW 1 cut(s) 30
TauI GCSGC 2 cut(s) 56, 638
TfiI GAWTC 2 cut(s) 694, 865
Tru1I TTAA 2 cut(s) 261, 786
Tru9I TTAA 2 cut(s) 261, 786
TscAI CASTG 1 cut(s) 900
TseFI GTSAC 3 cut(s) 269, 481, 506
TseI GCWGC 4 cut(s) 374, 383, 386, 488
Tsp45I GTSAC 3 cut(s) 269, 481, 506
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 1 cut(s) 900
VpaK11BI GGWCC 1 cut(s) 676
XapI RAATTY 4 cut(s) 153, 256, 718, 847
XceI RCATGY 2 cut(s) 71, 561
XspI CTAG 3 cut(s) 129, 299, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.