Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

29700093 .. 29701066

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1166800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGGTTTGCGAATTTATGTATGAGATTACTTGGTGGAGTGGATTCTCGACGGCCGCTAGGCCCCAAGAAGTTTCAGCAGCTGAAGGTGCAGGCTTACCTAGTTCCGGCCTCTCAGCTCACCAAGCTCTCACCCAAGCAGCCGGGATCAAGCTTGACGGAACTGGCCAGCTCAAGAACATACTGATCACTGGTGCCTCTGGTGGCGTCGGTCACTATGTAGTCCAACTAGCCAAGCTTGGAAACACTCATGTTACCGCCACTTGTGGAGCTTGTAACATTGACATTGTCAGGAGCTTAGGAGCAGATGAGGTTCTTGACTACAAGACCCCAGATGGGACGGCTCTCAAGAGCTCATCTGATTGGAAATATGATTTTGTGATTCACTGTGCATCAGCAGGCATTCCATGGTCAACTTTTGAGCCGAATTTGAGTGCGAATGGGAAGGTTATAGACCTTACTTGTGCTCTACAAAGACCCACCTTTTCGAAGAAGCAGCTGGTGCCGATGATCATAAATCTGAAACGTGAGAACCTGGAGTATCTTGTTGAGTTGATGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCTAAGCATCATCTGAGCAAGGCTGAATATGCTTGGGCTAGGAGAACTGATGGCTATGCTAATGGGAAGATCATTGTGGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

225

Amino Acids

24.2

Weight (kDa)

7.0

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	69 - 139	1.3e-07	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	100 - 222	1.2e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	194, 502
AciI	CCGC	2 cut(s)	57, 258
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	54, 166
AcsI	RAATTY	2 cut(s)	14, 427
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	107, 336
AjnI	CCWGG	1 cut(s)	534
Alw21I	GWGCWC	2 cut(s)	356, 469
AlwI	GGATC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	4 cut(s)	54, 62, 109, 166
ApeKI	GCWGC	3 cut(s)	80, 140, 496
ApoI	RAATTY	2 cut(s)	14, 427
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	113, 124, 592
AsuII	TTCGAA	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	168
BanI	GGYRCC	2 cut(s)	194, 502
BanII	GRGCYC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	356, 469
BbvI	GCAGC	3 cut(s)	92, 152, 508
BccI	CCATC	2 cut(s)	329, 632
BceAI	ACGGC	2 cut(s)	69, 357
BciT130I	CCWGG	1 cut(s)	536
BclI	TGATCA	2 cut(s)	186, 510
BcnI	CCSGG	1 cut(s)	145
BfaI	CTAG	4 cut(s)	60, 102, 230, 627
BisI	GCNGC	4 cut(s)	57, 81, 141, 497
BlsI	GCNGC	4 cut(s)	58, 82, 142, 498
Bme1390I	CCNGG	2 cut(s)	145, 536
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	65, 196, 504
BmrFI	CCNGG	2 cut(s)	145, 536
BmsI	GCATC	2 cut(s)	401, 604
BpmI	CTGGAG	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	488
BpuEI	CTTGAG	3 cut(s)	158, 332, 557
BpuMI	CCSGG	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 336
Bse1I	ACTGG	2 cut(s)	169, 196
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	107, 336
BseMII	CTCAG	2 cut(s)	129, 593
BseNI	ACTGG	2 cut(s)	169, 196
BseX3I	CGGCCG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	92, 152, 508
BsgI	GTGCAG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	56, 64, 111, 168
BshNI	GGYRCC	2 cut(s)	194, 502
BsiEI	CGRYCG	1 cut(s)	57
BsiHKAI	GWGCWC	2 cut(s)	356, 469
BsiSI	CCGG	2 cut(s)	108, 144
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	107, 336
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	4 cut(s)	56, 64, 111, 168
Bsp119I	TTCGAA	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	356, 469
Bsp143I	GATC	5 cut(s)	147, 186, 510, 582, 657
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	2 cut(s)	57, 258
BspANI	GGCC	4 cut(s)	56, 64, 111, 168
BspCNI	CTCAG	2 cut(s)	128, 594
BspLI	GGNNCC	3 cut(s)	65, 196, 504
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	488
BspT107I	GGYRCC	2 cut(s)	194, 502
BsrI	ACTGG	2 cut(s)	169, 196
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	5 cut(s)	147, 186, 510, 582, 657
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	389, 580
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	94, 170, 400
BstDEI	CTNAG	4 cut(s)	115, 298, 591, 602
BstDSI	CCRYGG	1 cut(s)	407
BstKTI	GATC	5 cut(s)	150, 189, 513, 585, 660
BstMBI	GATC	5 cut(s)	147, 186, 510, 582, 657
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 125, 502, 617
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	143, 534
BstV1I	GCAGC	3 cut(s)	92, 152, 508
BstZI	CGGCCG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	56, 64, 111, 168
BtgI	CCRYGG	1 cut(s)	407
BtsIMutI	CAGTG	2 cut(s)	189, 385
Cac8I	GCNNGC	3 cut(s)	94, 170, 400
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	196
CviAII	CATG	2 cut(s)	251, 408
DdeI	CTNAG	4 cut(s)	115, 298, 591, 602
DpnI	GATC	5 cut(s)	149, 188, 512, 584, 659
DpnII	GATC	5 cut(s)	147, 186, 510, 582, 657
EaeI	YGGCCR	2 cut(s)	54, 166
EagI	CGGCCG	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	354
EclXI	CGGCCG	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	356
Eco52I	CGGCCG	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	356
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	2 cut(s)	254, 411
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	2 cut(s)	250, 407
FbaI	TGATCA	2 cut(s)	186, 510
Fnu4HI	GCNGC	4 cut(s)	57, 81, 141, 497
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	57, 81, 141, 497
FspBI	CTAG	4 cut(s)	60, 102, 230, 627
GluI	GCNGC	4 cut(s)	57, 81, 141, 497
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	4 cut(s)	56, 64, 111, 168
HapII	CCGG	2 cut(s)	108, 144
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	254, 411
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	2 cut(s)	152, 236
HinfI	GANTC	3 cut(s)	45, 382, 587
HpaII	CCGG	2 cut(s)	108, 144
HphI	GGTGA	3 cut(s)	113, 124, 592
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	3 cut(s)	361, 522, 603
Hpy188III	TCNNGA	6 cut(s)	49, 175, 292, 317, 349, 574
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	2 cut(s)	55, 212
HpyAV	CCTTC	4 cut(s)	80, 439, 553, 557
HpyCH4III	ACNGT	2 cut(s)	389, 580
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	2 cut(s)	92, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 125, 502, 617
HpyF3I	CTNAG	4 cut(s)	115, 298, 591, 602
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	254, 411
Ksp22I	TGATCA	2 cut(s)	186, 510
Kzo9I	GATC	5 cut(s)	147, 186, 510, 582, 657
LmnI	GCTCC	3 cut(s)	269, 294, 302
Lsp1109I	GCAGC	3 cut(s)	92, 152, 508
LweI	GCATC	2 cut(s)	401, 604
MaeI	CTAG	4 cut(s)	60, 102, 230, 627
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	3 cut(s)	212, 253, 275
MalI	GATC	5 cut(s)	149, 188, 512, 584, 659
MboI	GATC	5 cut(s)	147, 186, 510, 582, 657
MboII	GAAGA	2 cut(s)	502, 667
MhlI	GDGCHC	2 cut(s)	356, 469
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	14, 427
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	122, 208, 304
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	673
Msp20I	TGGCCA	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	83, 499
MspI	CCGG	2 cut(s)	108, 144
MspR9I	CCNGG	2 cut(s)	145, 536
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	4 cut(s)	89, 125, 502, 617
NciI	CCSGG	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	5 cut(s)	147, 186, 510, 582, 657
NlaIII	CATG	2 cut(s)	254, 411
NlaIV	GGNNCC	3 cut(s)	65, 196, 504
NmuCI	GTSAC	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	488
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	45, 382
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	58, 82, 142, 498
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	65, 196, 504
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	287
PvuII	CAGCTG	2 cut(s)	83, 499
SacI	GAGCTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	673
SatI	GCNGC	4 cut(s)	57, 81, 141, 497
Sau3AI	GATC	5 cut(s)	147, 186, 510, 582, 657
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	2 cut(s)	145, 536
SduI	GDGCHC	2 cut(s)	356, 469
SfaNI	GCATC	2 cut(s)	401, 604
SfuI	TTCGAA	1 cut(s)	488
SmlI	CTYRAG	3 cut(s)	173, 347, 572
SmoI	CTYRAG	3 cut(s)	173, 347, 572
Sse9I	AATT	2 cut(s)	14, 427
SsiI	CCGC	2 cut(s)	57, 258
SspMI	CTAG	4 cut(s)	60, 102, 230, 627
SstI	GAGCTC	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	143, 534
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	2 cut(s)	389, 580
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	3 cut(s)	50, 488, 585
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	14, 427
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	2 cut(s)	45, 382
Tru1I	TTAA	1 cut(s)	673
Tru9I	TTAA	1 cut(s)	673
TscAI	CASTG	2 cut(s)	196, 392
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	80, 140, 496
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	196, 392
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	14, 427
XspI	CTAG	4 cut(s)	60, 102, 230, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.