FvH4_2g18340

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
15731648 .. 15733584
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18340.t1

Sequence Viewer

Length: 999 bp
ATGAAAGCCATGGCGGTAAAGGTTATGCGTGCGGTTCAGTACAACAGTTACGGTGGAGGACCTTCTGGTTTAAAGCATGTTGATATTCCGGTCCCAACTCCAAAGAAAGATGAGGTTTTGCTGAAAGTGGAAGCAGCTAGTATAAATCCAGTTGATTGGAAGCTGCAGAAAGGCACGGCGCGGCCTTTTTACCCTCGCAGTTTACCTCATACACCTGCTTGTGACGTAGCCGGAGAGGTTGTCGAGGTTGGACAAGAAGTTCGTGATTTCAAAGCCGGCGACAAAGTTGTCGCAGCTCTCACCCTTGCTACCGGAGGTGCATTTGCCGAGTATGCAACTGCTAGTGAGCGTTTCACGGCTATTAGGCCGGCTGAAGTTTCATCAGCCGAAGCTGCAGGATTACCTGTTGCTGGTCTCACAGCTCACCAATGTCTCACAGAAGCTGCAGGAATCAAGCTGGATGGCACAGGCCCTCAGAAGAACATATTGATTACGGCTGCCTCTGGTGGTGTGGGAACCTTTGCAGTTCAACTAGCCAAGCTAGGAAACACTCATGTCACGGCCACTTGTGGAGCTCGTAACATCGATTTCGTCAAGGGCTTAGGTGCTGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAGTAGCCCTTCTGGTAGGAAATATGATGCTGTGATCCACTGTGCAACAGCCATTCCTTGGTCTACTTTCAAGGCAAATTTGAGTCCAAGTGGGAAGGTCATAGACATTAGTCCCAGGCTAAGTAACTGGCTCACTATGGCTGTAAACAAACTCACCTTCTCCAAGAAGCAGCTAGTGCAGCTGATGGTGAATCCCACTGCTGAGAATCTGGACTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAAAGTATCCTCTGAGCAAGGCTGAAGAAGCTTGGGCTAAGAGTATAGATGGTCATGCTACTGGGAAGATCATTGTGGAGCCTTAA

Protein Analysis

333

Amino Acids

35.02

Weight (kDa)

8.96

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 119 2.5e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 170 - 282 3e-09 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 201 - 330 1.2e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 708
AccI GTMKAC 1 cut(s) 713
AccII CGCG 1 cut(s) 181
AciI CCGC 3 cut(s) 14, 32, 181
AclWI GGATC 1 cut(s) 679
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 1 cut(s) 727
AcuI CTGAAG 3 cut(s) 393, 657, 957
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 410, 639, 640, 708
AgsI TTSAA 3 cut(s) 271, 530, 721
AjnI CCWGG 1 cut(s) 764
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 419, 437
AlwI GGATC 1 cut(s) 679
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 4 cut(s) 182, 365, 469, 561
ApeKI GCWGC 9 cut(s) 134, 163, 293, 392, 443, 497, 644, 820, 829
ApoI RAATTY 1 cut(s) 727
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 59, 91, 470
AsuHPI GGTGA 6 cut(s) 292, 416, 796, 850, 892, 916
AvaII GGWCC 2 cut(s) 59, 91
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 9 cut(s) 146, 150, 305, 379, 430, 484, 656, 832, 841
BccI CCATC 3 cut(s) 455, 829, 956
BceAI ACGGC 4 cut(s) 192, 372, 510, 576
BciT130I CCWGG 1 cut(s) 766
BciVI GTATCC 1 cut(s) 930
BcoDI GTCTC 2 cut(s) 419, 437
BfaI CTAG 5 cut(s) 138, 342, 533, 542, 824
BfmI CTRYAG 3 cut(s) 164, 393, 444
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 930
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 2 cut(s) 59, 91
BmgT120I GGNCC 3 cut(s) 59, 91, 470
BmiI GGNNCC 3 cut(s) 93, 517, 993
BmrFI CCNGG 1 cut(s) 766
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 984
BoxI GACNNNNGTC 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 881
Bsa29I ATCGAT 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 9, 707, 764
BsaWI WCCGGW 2 cut(s) 88, 311
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 410, 639, 640, 708
Bse118I RCCGGY 2 cut(s) 275, 367
Bse1I ACTGG 3 cut(s) 149, 782, 979
BseBI CCWGG 1 cut(s) 766
BseCI ATCGAT 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 9, 707, 764
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 4 cut(s) 410, 639, 640, 708
BseMII CTCAG 4 cut(s) 488, 641, 843, 917
BseNI ACTGG 3 cut(s) 149, 782, 979
BseXI GCAGC 9 cut(s) 146, 150, 305, 379, 430, 484, 656, 832, 841
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 184, 367, 471, 563
BshVI ATCGAT 1 cut(s) 585
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 5 cut(s) 89, 231, 276, 312, 368
BslFI GGGAC 2 cut(s) 77, 747
BslI CCNNNNNNNGG 4 cut(s) 410, 639, 640, 708
BsmAI GTCTC 2 cut(s) 419, 437
BsmFI GGGAC 2 cut(s) 77, 747
BsnI GGCC 4 cut(s) 184, 367, 471, 563
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 684, 906, 981
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 14, 32, 181
BspANI GGCC 4 cut(s) 184, 367, 471, 563
BspCNI CTCAG 4 cut(s) 487, 642, 844, 918
BspDI ATCGAT 1 cut(s) 585
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 93, 517, 993
BspMAI CTGCAG 3 cut(s) 168, 397, 448
BspMI ACCTGC 1 cut(s) 223
BspPI GGATC 1 cut(s) 679
BspTNI GGTCTC 1 cut(s) 419
BsrFI RCCGGY 2 cut(s) 275, 367
BsrI ACTGG 3 cut(s) 149, 782, 979
BssAI RCCGGY 2 cut(s) 275, 367
BssECI CCNNGG 3 cut(s) 9, 707, 764
BssMI GATC 3 cut(s) 684, 906, 981
BssT1I CCWWGG 2 cut(s) 9, 707
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 4 cut(s) 47, 53, 692, 904
BstAPI GCANNNNNTGC 1 cut(s) 826
BstC8I GCNNGC 3 cut(s) 30, 277, 369
BstDEI CTNAG 7 cut(s) 474, 601, 650, 770, 852, 926, 951
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 687, 909, 984
BstMAI GTCTC 2 cut(s) 419, 437
BstMBI GATC 3 cut(s) 684, 906, 981
BstMWI GCNNNNNNNGC 5 cut(s) 332, 392, 826, 829, 941
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 1 cut(s) 80
BstPAI GACNNNNGTC 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 3 cut(s) 164, 393, 444
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 9 cut(s) 146, 150, 305, 379, 430, 484, 656, 832, 841
BstXI CCANNNNNNTGG 1 cut(s) 156
Bsu15I ATCGAT 1 cut(s) 585
BsuI GTATCC 1 cut(s) 930
BsuRI GGCC 4 cut(s) 184, 367, 471, 563
BsuTUI ATCGAT 1 cut(s) 585
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 688, 846
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 30, 277, 369
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 2 cut(s) 275, 367
Cfr13I GGNCC 3 cut(s) 59, 91, 470
ClaI ATCGAT 1 cut(s) 585
Csp6I GTAC 1 cut(s) 40
CviAII CATG 4 cut(s) 10, 77, 554, 968
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 7 cut(s) 474, 601, 650, 770, 852, 926, 951
DpnI GATC 3 cut(s) 686, 908, 983
DpnII GATC 3 cut(s) 684, 906, 981
DraI TTTAAA 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 575
Eco130I CCWWGG 2 cut(s) 9, 707
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 59, 91
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 3 cut(s) 393, 657, 957
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 59, 470
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 9, 707
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 9, 707
FaeI CATG 4 cut(s) 13, 80, 557, 971
FaqI GGGAC 2 cut(s) 77, 747
FatI CATG 4 cut(s) 9, 76, 553, 967
FblI GTMKAC 1 cut(s) 713
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 577
FspBI CTAG 5 cut(s) 138, 342, 533, 542, 824
GlaI GCGC 1 cut(s) 180
HaeIII GGCC 4 cut(s) 184, 367, 471, 563
HapII CCGG 5 cut(s) 89, 231, 276, 312, 368
HhaI GCGC 1 cut(s) 181
Hin1II CATG 4 cut(s) 13, 80, 557, 971
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 942
HinfI GANTC 5 cut(s) 450, 733, 841, 856, 911
HpaII CCGG 5 cut(s) 89, 231, 276, 312, 368
HphI GGTGA 6 cut(s) 292, 416, 796, 850, 892, 916
Hpy166II GTNNAC 3 cut(s) 203, 714, 796
Hpy188I TCNGA 3 cut(s) 477, 651, 927
Hpy188III TCNNGA 4 cut(s) 263, 620, 860, 898
Hpy8I GTNNAC 3 cut(s) 203, 714, 796
HpyAV CCTTC 7 cut(s) 72, 632, 669, 739, 817, 877, 881
HpyCH4III ACNGT 4 cut(s) 47, 53, 692, 904
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 8 cut(s) 166, 320, 335, 395, 446, 524, 695, 829
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 392, 826, 829, 941
HpyF3I CTNAG 7 cut(s) 474, 601, 650, 770, 852, 926, 951
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 4 cut(s) 13, 80, 557, 971
HspAI GCGC 1 cut(s) 179
KroI GCCGGC 2 cut(s) 275, 367
KroNI GCCGGC 2 cut(s) 277, 369
Kzo9I GATC 3 cut(s) 684, 906, 981
LmnI GCTCC 2 cut(s) 572, 991
Lsp1109I GCAGC 9 cut(s) 146, 150, 305, 379, 430, 484, 656, 832, 841
LweI GCATC 1 cut(s) 667
MaeI CTAG 5 cut(s) 138, 342, 533, 542, 824
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 5 cut(s) 47, 221, 556, 578, 773
MalI GATC 3 cut(s) 686, 908, 983
MboI GATC 3 cut(s) 684, 906, 981
MboII GAAGA 3 cut(s) 490, 950, 991
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 1 cut(s) 727
MlyI GAGTC 2 cut(s) 742, 905
MmeI TCCRAC 1 cut(s) 229
MroNI GCCGGC 2 cut(s) 275, 367
MseI TTAA 3 cut(s) 71, 873, 997
MspA1I CMGCKG 1 cut(s) 832
MspI CCGG 5 cut(s) 89, 231, 276, 312, 368
MspR9I CCNGG 1 cut(s) 766
MvaI CCWGG 1 cut(s) 766
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 5 cut(s) 332, 392, 826, 829, 941
NaeI GCCGGC 2 cut(s) 277, 369
NcoI CCATGG 1 cut(s) 9
NdeII GATC 3 cut(s) 684, 906, 981
NgoMIV GCCGGC 2 cut(s) 275, 367
NlaIII CATG 4 cut(s) 13, 80, 557, 971
NlaIV GGNNCC 3 cut(s) 93, 517, 993
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 221, 556
NspI RCATGY 1 cut(s) 80
PaqCI CACCTGC 1 cut(s) 223
PdiI GCCGGC 2 cut(s) 277, 369
PfeI GAWTC 3 cut(s) 450, 841, 856
PflMI CCANNNNNTGG 1 cut(s) 708
PleI GAGTC 2 cut(s) 741, 905
PpsI GAGTC 2 cut(s) 741, 905
PpuMI RGGWCCY 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 3 cut(s) 93, 517, 993
PspPI GGNCC 3 cut(s) 59, 91, 470
PspPPI RGGWCCY 1 cut(s) 59
PstI CTGCAG 3 cut(s) 168, 397, 448
PstNI CAGNNNCTG 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 832
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 3 cut(s) 71, 873, 997
Sau3AI GATC 3 cut(s) 684, 906, 981
Sau96I GGNCC 3 cut(s) 59, 91, 470
SchI GAGTC 2 cut(s) 742, 905
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 3 cut(s) 164, 393, 444
SinI GGWCC 2 cut(s) 59, 91
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
Sse9I AATT 1 cut(s) 727
SsiI CCGC 3 cut(s) 14, 32, 181
SspMI CTAG 5 cut(s) 138, 342, 533, 542, 824
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 2 cut(s) 9, 707
TaaI ACNGT 4 cut(s) 47, 53, 692, 904
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 243, 585, 909
TasI AATT 1 cut(s) 727
TatI WGTACW 1 cut(s) 39
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 3 cut(s) 450, 841, 856
Tru1I TTAA 3 cut(s) 71, 873, 997
Tru9I TTAA 3 cut(s) 71, 873, 997
TscAI CASTG 2 cut(s) 695, 853
TseFI GTSAC 2 cut(s) 221, 556
TseI GCWGC 9 cut(s) 134, 163, 293, 392, 443, 497, 644, 820, 829
Tsp45I GTSAC 2 cut(s) 221, 556
TspDTI ATGAA 2 cut(s) 17, 369
TspRI CASTG 2 cut(s) 695, 853
Van91I CCANNNNNTGG 1 cut(s) 708
VpaK11BI GGWCC 2 cut(s) 59, 91
XapI RAATTY 1 cut(s) 727
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 713
XspI CTAG 5 cut(s) 138, 342, 533, 542, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.