RLG00000012804

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
22541804 .. 22543716
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012804

Sequence Viewer

Length: 933 bp
ATGGCGGTAAAGCTTATGCATGCGGTTCAGTACAACAGTTATGGTGGAGGACCCTCTGGTTTAAATCATGTTGAGATTCCAATCCCGACTCCGAAGAAAGATGAGGTTTTGTTGAAATTAGAAGCAGCTAGTCTGAATCCCGTTGATTGGACAATTCAGACAGGCTTGATGCGGCCTTTATTTTTCCCGCGCCACTTTCCTCATACACCTGTATCTCATACGTTGATTATTTTGTTAAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCGGAAGTTTCAGCAGCCGAAGCTGCAGGGTTACCTATTGCAGGTATCACAGCTCACCAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCCGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGGGCTGACGAGGTTCTTGACTATAAGACCCCTGAAGGGGCAGCTTTGAATAGCCCTTCTGGTCGGAAATATGATGCTGTAATCCACTGTACAACGGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAAGGCTATGCTTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCCCTGCTGCCGGTGATTCGCAAGGCTGAGAACCTGGAATATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCGACGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGACGGCCATGCTACTGGGAAGATCATTGTGGAGCCTAAATAG

Protein Analysis

311

Amino Acids

32.88

Weight (kDa)

8.91

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 146 - 249 1.9e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 177 - 307 3.4e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 743
Acc36I ACCTGC 2 cut(s) 329, 743
AccB1I GGYRCC 2 cut(s) 392, 754
AccII CGCG 2 cut(s) 190, 505
AciI CCGC 6 cut(s) 5, 23, 172, 188, 296, 401
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 2 cut(s) 257, 655
AcuI CTGAAG 2 cut(s) 585, 888
AfaI GTAC 2 cut(s) 32, 622
AfiI CCNNNNNNNGG 5 cut(s) 147, 338, 567, 568, 766
AgsI TTSAA 2 cut(s) 115, 580
AjnI CCWGG 1 cut(s) 789
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
Alw26I GTCTC 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 4 cut(s) 173, 293, 397, 895
ApeKI GCWGC 8 cut(s) 125, 311, 320, 371, 425, 572, 748, 763
ApoI RAATTY 2 cut(s) 257, 655
AspLEI GCGC 2 cut(s) 192, 505
AspS9I GGNCC 4 cut(s) 50, 398, 639, 695
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 5 cut(s) 344, 724, 781, 823, 847
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 3 cut(s) 50, 639, 695
BaeGI GKGCMC 2 cut(s) 447, 759
BaeI ACNNNNGTAYC 2 cut(s) 195, 228
BanI GGYRCC 2 cut(s) 392, 754
BbvI GCAGC 8 cut(s) 137, 307, 323, 358, 412, 584, 750, 760
BccI CCATC 1 cut(s) 486
BceAI ACGGC 2 cut(s) 406, 910
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 1 cut(s) 791
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 4 cut(s) 129, 270, 291, 461
BfmI CTRYAG 3 cut(s) 321, 372, 722
BfuAI ACCTGC 2 cut(s) 329, 743
Bme1390I CCNGG 2 cut(s) 693, 791
Bme18I GGWCC 3 cut(s) 50, 639, 695
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 4 cut(s) 50, 398, 639, 695
BmiI GGNNCC 5 cut(s) 52, 394, 476, 756, 924
BmrFI CCNGG 2 cut(s) 693, 791
BmrI ACTGGG 1 cut(s) 915
BmsI GCATC 5 cut(s) 159, 595, 859, 862, 897
BmuI ACTGGG 1 cut(s) 915
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 529
BpuEI CTTGAG 2 cut(s) 351, 812
BpuMI CCSGG 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 635
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 338, 567, 568, 766
Bse118I RCCGGY 2 cut(s) 395, 766
Bse1I ACTGG 2 cut(s) 355, 910
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 1 cut(s) 791
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 1 cut(s) 850
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 147, 338, 567, 568, 766
BseMII CTCAG 2 cut(s) 774, 848
BseNI ACTGG 2 cut(s) 355, 910
BseSI GKGCMC 2 cut(s) 447, 759
BseXI GCAGC 8 cut(s) 137, 307, 323, 358, 412, 584, 750, 760
Bsh1236I CGCG 2 cut(s) 190, 505
BshFI GGCC 4 cut(s) 175, 295, 399, 897
BshNI GGYRCC 2 cut(s) 392, 754
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 4 cut(s) 299, 396, 693, 767
BslI CCNNNNNNNGG 5 cut(s) 147, 338, 567, 568, 766
BsmAI GTCTC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 4 cut(s) 175, 295, 399, 897
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 447, 759
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 2 cut(s) 837, 912
BspACI CCGC 6 cut(s) 5, 23, 172, 188, 296, 401
BspANI GGCC 4 cut(s) 175, 295, 399, 897
BspCNI CTCAG 2 cut(s) 775, 849
BspFNI CGCG 2 cut(s) 190, 505
BspLI GGNNCC 5 cut(s) 52, 394, 476, 756, 924
BspMAI CTGCAG 2 cut(s) 325, 376
BspMI ACCTGC 2 cut(s) 329, 743
BspT107I GGYRCC 2 cut(s) 392, 754
BsrFI RCCGGY 2 cut(s) 395, 766
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 2 cut(s) 355, 910
BssAI RCCGGY 2 cut(s) 395, 766
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 2 cut(s) 837, 912
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 1 cut(s) 791
Bst4CI ACNGT 4 cut(s) 38, 286, 620, 835
BstAPI GCANNNNNTGC 1 cut(s) 754
BstAUI TGTACA 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 21, 401
BstDEI CTNAG 3 cut(s) 529, 783, 857
BstEII GGTNACC 1 cut(s) 327
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 850
BstFNI CGCG 2 cut(s) 190, 505
BstHHI GCGC 2 cut(s) 192, 505
BstKTI GATC 2 cut(s) 840, 915
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 837, 912
BstMWI GCNNNNNNNGC 7 cut(s) 260, 317, 320, 754, 763, 872, 894
BstNI CCWGG 1 cut(s) 791
BstNSI RCATGY 1 cut(s) 23
BstPI GGTNACC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 691, 789
BstSFI CTRYAG 3 cut(s) 321, 372, 722
BstSLI GKGCMC 2 cut(s) 447, 759
BstUI CGCG 2 cut(s) 190, 505
BstV1I GCAGC 8 cut(s) 137, 307, 323, 358, 412, 584, 750, 760
BstXI CCANNNNNNTGG 1 cut(s) 905
BsuRI GGCC 4 cut(s) 175, 295, 399, 897
BtsCI GGATG 1 cut(s) 850
BtsIMutI CAGTG 2 cut(s) 362, 616
BveI ACCTGC 2 cut(s) 329, 743
Cac8I GCNNGC 2 cut(s) 21, 401
CfoI GCGC 2 cut(s) 192, 505
Cfr10I RCCGGY 2 cut(s) 395, 766
Cfr13I GGNCC 4 cut(s) 50, 398, 639, 695
CseI GACGC 1 cut(s) 856
Csp6I GTAC 2 cut(s) 31, 621
CviAII CATG 4 cut(s) 20, 68, 482, 899
CviQI GTAC 2 cut(s) 31, 621
DdeI CTNAG 3 cut(s) 529, 783, 857
DpnI GATC 2 cut(s) 839, 914
DpnII GATC 2 cut(s) 837, 912
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 635
Eco47I GGWCC 3 cut(s) 50, 639, 695
Eco57I CTGAAG 2 cut(s) 585, 888
Eco88I CYCGRG 1 cut(s) 470
Eco91I GGTNACC 1 cut(s) 327
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 635
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 4 cut(s) 23, 71, 485, 902
FatI CATG 4 cut(s) 19, 67, 481, 898
FauI CCCGC 2 cut(s) 195, 408
FokI GGATG 1 cut(s) 837
FspBI CTAG 4 cut(s) 129, 270, 291, 461
GlaI GCGC 2 cut(s) 191, 504
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 4 cut(s) 175, 295, 399, 897
HapII CCGG 4 cut(s) 299, 396, 693, 767
HgaI GACGC 1 cut(s) 856
HhaI GCGC 2 cut(s) 192, 505
Hin1II CATG 4 cut(s) 23, 71, 485, 902
Hin6I GCGC 2 cut(s) 190, 503
HinP1I GCGC 2 cut(s) 190, 503
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 7 cut(s) 76, 88, 136, 378, 661, 772, 842
HpaII CCGG 4 cut(s) 299, 396, 693, 767
HphI GGTGA 5 cut(s) 344, 724, 781, 823, 847
Hpy166II GTNNAC 1 cut(s) 642
Hpy188I TCNGA 6 cut(s) 93, 135, 159, 597, 654, 858
Hpy188III TCNNGA 6 cut(s) 85, 432, 472, 523, 548, 829
Hpy8I GTNNAC 1 cut(s) 642
Hpy99I CGWCG 2 cut(s) 850, 896
HpyAV CCTTC 5 cut(s) 560, 597, 667, 808, 812
HpyCH4III ACNGT 4 cut(s) 38, 286, 620, 835
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 6 cut(s) 19, 263, 323, 338, 374, 452
HpyF10VI GCNNNNNNNGC 7 cut(s) 260, 317, 320, 754, 763, 872, 894
HpyF3I CTNAG 3 cut(s) 529, 783, 857
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 4 cut(s) 23, 71, 485, 902
HspAI GCGC 2 cut(s) 190, 503
Kzo9I GATC 2 cut(s) 837, 912
LmnI GCTCC 3 cut(s) 500, 743, 922
Lsp1109I GCAGC 8 cut(s) 137, 307, 323, 358, 412, 584, 750, 760
LweI GCATC 5 cut(s) 159, 595, 859, 862, 897
MaeI CTAG 4 cut(s) 129, 270, 291, 461
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 5 cut(s) 286, 327, 418, 484, 506
MalI GATC 2 cut(s) 839, 914
MboI GATC 2 cut(s) 837, 912
MboII GAAGA 3 cut(s) 106, 881, 922
MhlI GDGCHC 2 cut(s) 447, 759
MluCI AATT 4 cut(s) 116, 153, 257, 655
MlyI GAGTC 4 cut(s) 82, 387, 670, 836
MmeI TCCRAC 2 cut(s) 481, 575
MnlI CCTC 9 cut(s) 41, 64, 97, 210, 236, 428, 439, 535, 864
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 4 cut(s) 62, 236, 648, 804
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 4 cut(s) 299, 396, 693, 767
MspR9I CCNGG 2 cut(s) 693, 791
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 1 cut(s) 791
MvnI CGCG 2 cut(s) 190, 505
MwoI GCNNNNNNNGC 7 cut(s) 260, 317, 320, 754, 763, 872, 894
NciI CCSGG 1 cut(s) 693
NdeII GATC 2 cut(s) 837, 912
NlaIII CATG 4 cut(s) 23, 71, 485, 902
NlaIV GGNNCC 5 cut(s) 52, 394, 476, 756, 924
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 1 cut(s) 23
PaeI GCATGC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 743
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 76, 136, 772
PleI GAGTC 4 cut(s) 82, 386, 669, 836
PpsI GAGTC 4 cut(s) 82, 386, 669, 836
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 789
PspEI GGTNACC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 789
PspN4I GGNNCC 5 cut(s) 52, 394, 476, 756, 924
PspPI GGNCC 4 cut(s) 50, 398, 639, 695
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 2 cut(s) 325, 376
PvuII CAGCTG 1 cut(s) 751
RsaI GTAC 2 cut(s) 32, 622
RsaNI GTAC 2 cut(s) 31, 621
SaqAI TTAA 4 cut(s) 62, 236, 648, 804
Sau3AI GATC 2 cut(s) 837, 912
Sau96I GGNCC 4 cut(s) 50, 398, 639, 695
SchI GAGTC 4 cut(s) 82, 387, 670, 836
ScrFI CCNGG 2 cut(s) 693, 791
SduI GDGCHC 2 cut(s) 447, 759
SfaNI GCATC 5 cut(s) 159, 595, 859, 862, 897
SfcI CTRYAG 3 cut(s) 321, 372, 722
SinI GGWCC 3 cut(s) 50, 639, 695
SmlI CTYRAG 2 cut(s) 366, 827
SmoI CTYRAG 2 cut(s) 366, 827
SphI GCATGC 1 cut(s) 23
Sse9I AATT 4 cut(s) 116, 153, 257, 655
SsiI CCGC 6 cut(s) 5, 23, 172, 188, 296, 401
SspMI CTAG 4 cut(s) 129, 270, 291, 461
StyD4I CCNGG 2 cut(s) 691, 789
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 4 cut(s) 38, 286, 620, 835
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 840, 845, 891
TasI AATT 4 cut(s) 116, 153, 257, 655
TatI WGTACW 2 cut(s) 30, 620
TauI GCSGC 2 cut(s) 175, 298
TfiI GAWTC 3 cut(s) 76, 136, 772
Tru1I TTAA 4 cut(s) 62, 236, 648, 804
Tru9I TTAA 4 cut(s) 62, 236, 648, 804
TscAI CASTG 2 cut(s) 362, 623
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 8 cut(s) 125, 311, 320, 371, 425, 572, 748, 763
Tsp45I GTSAC 1 cut(s) 484
TspRI CASTG 2 cut(s) 362, 623
VpaK11BI GGWCC 3 cut(s) 50, 639, 695
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 2 cut(s) 257, 655
XceI RCATGY 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XspI CTAG 4 cut(s) 129, 270, 291, 461
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.