Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

46124831 .. 46126091

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTGCCAAGCTTATGCATGCGGTTCAGTACGACACCCACGGTAGAGGACCTTCTGGTTTAAAGCATGTTCCAGTTCCAGTTCCAATTCCCACTCCTAAGAAAAATGAAGTTTTACTGAAGCTGGAAGCAGCAAGTCTAAATGCAGGTGATTATAAGATTCAGAAAGGCCAGGCGCGACTCCGCGACCTATTTTCCCGCCCAAATTGCCTCACATTCCTGAATGGAGGTGGACTCGGTGAGTTTGCTGCAGCTAATGCCGAAATGGTAGTTGCTAGGTCTTCCGTCGTTTCAGCGGCAGAAGGTGCAGGCTTACCCATTGCCGCTCTCTCTGCTCACTGGGCTCTCACCAAAGATGCAGAGATCAAGCTTGATGGAACAGGCGAGCAGAAGAACATACTCATTACCGGTGCCTCTGGTAACGTCGGTCTCTATGCAATTAATCCAACTGGCAAAGCTCGGAAACGCTCATGTCACCGCCACTTGTGGAGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

165

Amino Acids

17.4

Weight (kDa)

9.73

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	410
AccBSI	CCGCTC	1 cut(s)	326
AccII	CGCG	2 cut(s)	178, 186
AciI	CCGC	6 cut(s)	23, 184, 199, 296, 324, 478
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	32
AgeI	ACCGGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	6 cut(s)	13, 124, 254, 370, 458, 492
AluI	AGCT	6 cut(s)	13, 124, 254, 370, 458, 492
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	5, 131, 248, 251
AseI	ATTAAT	1 cut(s)	441
AsiGI	ACCGGT	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	4 cut(s)	161, 251, 340, 467
AvaII	GGWCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	2 cut(s)	346, 494
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	143, 235, 263
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	6 cut(s)	6, 132, 249, 252, 297, 324
BlsI	GCNGC	6 cut(s)	7, 133, 250, 253, 298, 325
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	1 cut(s)	346
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	407
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	4 cut(s)	74, 80, 344, 454
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	4 cut(s)	74, 80, 344, 454
BseXI	GCAGC	3 cut(s)	143, 235, 263
BsgI	GTGCAG	1 cut(s)	327
Bsh1236I	CGCG	2 cut(s)	178, 186
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	410
BshTI	ACCGGT	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	494
BsiSI	CCGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	434
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	346, 494
Bsp143I	GATC	1 cut(s)	363
BspACI	CCGC	6 cut(s)	23, 184, 199, 296, 324, 478
BspANI	GGCC	1 cut(s)	171
BspFNI	CGCG	2 cut(s)	178, 186
BspLI	GGNNCC	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	4 cut(s)	74, 80, 344, 454
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	44
BstAPI	GCANNNNNTGC	2 cut(s)	257, 305
BstC8I	GCNNGC	3 cut(s)	21, 310, 386
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	40
BstFNI	CGCG	2 cut(s)	178, 186
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 257, 305, 332, 341
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	249
BstUI	CGCG	2 cut(s)	178, 186
BstV1I	GCAGC	3 cut(s)	143, 235, 263
BstV2I	GAAGAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	21, 310, 386
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	31
CspAI	ACCGGT	1 cut(s)	407
CviAII	CATG	3 cut(s)	20, 68, 471
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DraI	TTTAAA	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	492
Eco24I	GRGCYC	2 cut(s)	346, 494
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	346, 494
FaeI	CATG	3 cut(s)	23, 71, 474
FaiI	YATR	8 cut(s)	17, 21, 69, 156, 398, 435, 472, 496
FatI	CATG	3 cut(s)	19, 67, 470
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	6, 132, 249, 252, 297, 324
FriOI	GRGCYC	2 cut(s)	346, 494
Fsp4HI	GCNGC	6 cut(s)	6, 132, 249, 252, 297, 324
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	6 cut(s)	6, 132, 249, 252, 297, 324
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	23, 71, 474
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	2 cut(s)	11, 368
HinfI	GANTC	3 cut(s)	160, 180, 234
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	161, 251, 340, 467
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	165, 462
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	2 cut(s)	290, 428
HpyAV	CCTTC	2 cut(s)	63, 296
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	6 cut(s)	19, 146, 251, 308, 359, 437
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 257, 305, 332, 341
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	23, 71, 474
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	3 cut(s)	143, 235, 263
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	419, 473
MalI	GATC	1 cut(s)	365
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	273, 403
MhlI	GDGCHC	2 cut(s)	346, 494
MluCI	AATT	3 cut(s)	87, 205, 438
MlyI	GAGTC	2 cut(s)	174, 228
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	41, 221, 221, 424
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	2 cut(s)	62, 441
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	178, 186
MwoI	GCNNNNNNNGC	5 cut(s)	207, 257, 305, 332, 341
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	3 cut(s)	23, 71, 474
NlaIV	GGNNCC	1 cut(s)	412
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
PaeI	GCATGC	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	7, 133, 250, 253, 298, 325
PleI	GAGTC	2 cut(s)	174, 228
PpsI	GAGTC	2 cut(s)	174, 228
PpuMI	RGGWCCY	1 cut(s)	50
PshBI	ATTAAT	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	62, 441
SatI	GCNGC	6 cut(s)	6, 132, 249, 252, 297, 324
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	174, 228
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	346, 494
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	50
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	87, 205, 438
SsiI	CCGC	6 cut(s)	23, 184, 199, 296, 324, 478
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	426
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	87, 205, 438
TauI	GCSGC	2 cut(s)	299, 326
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	62, 441
Tru9I	TTAA	2 cut(s)	62, 441
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	4 cut(s)	5, 131, 248, 251
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	441
XceI	RCATGY	2 cut(s)	23, 71
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.