Prupe.8G195600_v2.0.a1

Quinone-oxidoreductase homolog, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000313
Physical Location & Seq
Forward (+)
18773995 .. 18775845
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G195600.1

Sequence Viewer

Length: 828 bp
ATGGCACGGCCTTTTCTCCCAAGCAAATTACCTCACACGCCTGTTACTGATGTGGCTGGAGAGATTGTAGAGGTTGGACAAGGAGTTCAAAAGTTCAAAGTTGGTGACAAAGTTGTGGCCTTACTTACTTACAGTAATGGAGGTGGGCTGGCTGAGTTTGCTGCAGCTAAAGAGAAATCAGTAGTTTCTCGGCCACCTGAAGTTTCAGCAGCTGAAGGTGCAGGCTTGCCTGTTGCTGGTCTCTCAGCTCACCAGGCTCTCACCAAAGCCGCAGGGATCAAGCTTGATGGAACTGGCCAGCTCAAGAACATACTGATCACTGGTGCCGCCGGCGGTGTTGGTCTCTATGCAGTCCAACTAGCAAAGCTTGGAAACATTCATGTAACAGCCACTTGTGGAGCTAGAAACATTGAATTGGTGAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACAACTGAGGGGGAAGCTCTTAAGAGCCCGTCGGGTCGAAAATATGATTTCGTGATCCACAGTGCATCCGCAGCCATACCTTGGTCAGTTTTTGAACCAAATTTGAGTGCAAGAGGGAAGGTCATTGACCTTACTCCTCGTGCAAGTTCCTTGTTTACTTTTCTTCTAAAGAAAATCACTTTCTCCAAGAAGAGGCTGGTGCCACTGATGATAAATGCCAAGGCTGAGAACTTGGATTGTCTTGTTCAGTTGGTGAAGGAAGGAAAACTCAAGACTGTGATTGATTCAAACCATTCTCTAAGCAAGGCTGAAGATGCTTGGGCTAAGAGAATCAATAGCCAATGCACTGGGAAGATCATTGTGGAGCCTTAG

Protein Analysis

276

Amino Acids

28.93

Weight (kDa)

9.39

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 323, 655
AccB7I CCANNNNNTGG 1 cut(s) 537
AciI CCGC 4 cut(s) 270, 327, 333, 525
AclWI GGATC 2 cut(s) 284, 505
AcoI YGGCCR 2 cut(s) 191, 295
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 3 cut(s) 219, 234, 786
AfiI CCNNNNNNNGG 3 cut(s) 236, 537, 648
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 89, 97, 413, 551, 744
AjnI CCWGG 1 cut(s) 252
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 9 cut(s) 167, 212, 248, 283, 301, 367, 401, 426, 473
AluI AGCT 9 cut(s) 167, 212, 248, 283, 301, 367, 401, 426, 473
Alw26I GTCTC 2 cut(s) 245, 347
AlwI GGATC 2 cut(s) 284, 505
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 4 cut(s) 8, 117, 191, 295
ApeKI GCWGC 4 cut(s) 161, 164, 209, 527
ApoI RAATTY 1 cut(s) 556
AsuHPI GGTGA 5 cut(s) 116, 242, 253, 430, 721
BalI TGGCCA 1 cut(s) 297
BanI GGYRCC 2 cut(s) 323, 655
BanII GRGCYC 1 cut(s) 485
BauI CACGAG 1 cut(s) 594
BbvI GCAGC 4 cut(s) 148, 176, 221, 539
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 245, 347
BfaI CTAG 2 cut(s) 359, 402
BfmI CTRYAG 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 6 cut(s) 162, 165, 210, 270, 327, 528
BlsI GCNGC 6 cut(s) 163, 166, 211, 271, 328, 529
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 325, 657, 822
BmrFI CCNGG 1 cut(s) 254
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 2 cut(s) 530, 760
BmuI ACTGGG 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 427
BpuEI CTTGAG 2 cut(s) 287, 710
BsaI GGTCTC 2 cut(s) 245, 347
BsaJI CCNNGG 2 cut(s) 536, 675
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 537, 648
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 3 cut(s) 298, 325, 808
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 536, 675
BseGI GGATG 1 cut(s) 521
BseLI CCNNNNNNNGG 3 cut(s) 236, 537, 648
BseMII CTCAG 4 cut(s) 144, 258, 453, 672
BseNI ACTGG 3 cut(s) 298, 325, 808
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 4 cut(s) 148, 176, 221, 539
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 4 cut(s) 10, 119, 193, 297
BshNI GGYRCC 2 cut(s) 323, 655
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 236, 537, 648
BsmAI GTCTC 2 cut(s) 245, 347
BsnI GGCC 4 cut(s) 10, 119, 193, 297
Bso31I GGTCTC 2 cut(s) 245, 347
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 4 cut(s) 276, 315, 510, 810
BspACI CCGC 4 cut(s) 270, 327, 333, 525
BspANI GGCC 4 cut(s) 10, 119, 193, 297
BspCNI CTCAG 4 cut(s) 145, 257, 454, 673
BspLI GGNNCC 3 cut(s) 325, 657, 822
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 284, 505
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 2 cut(s) 323, 655
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 2 cut(s) 245, 347
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 3 cut(s) 298, 325, 808
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 536, 675
BssMI GATC 4 cut(s) 276, 315, 510, 810
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 2 cut(s) 536, 675
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 3 cut(s) 134, 518, 733
Bst6I CTCTTC 2 cut(s) 416, 641
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 5 cut(s) 150, 223, 227, 299, 331
BstDEI CTNAG 8 cut(s) 153, 244, 427, 462, 681, 755, 780, 825
BstF5I GGATG 1 cut(s) 521
BstKTI GATC 4 cut(s) 279, 318, 513, 813
BstMAI GTCTC 2 cut(s) 245, 347
BstMBI GATC 4 cut(s) 276, 315, 510, 810
BstMWI GCNNNNNNNGC 5 cut(s) 158, 218, 254, 527, 770
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 148, 176, 221, 539
BstXI CCANNNNNNTGG 1 cut(s) 803
BsuRI GGCC 4 cut(s) 10, 119, 193, 297
BtsCI GGATG 1 cut(s) 521
BtsIMutI CAGTG 4 cut(s) 318, 523, 659, 801
Cac8I GCNNGC 5 cut(s) 150, 223, 227, 299, 331
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 329
CviAII CATG 1 cut(s) 380
DdeI CTNAG 8 cut(s) 153, 244, 427, 462, 681, 755, 780, 825
DpnI GATC 4 cut(s) 278, 317, 512, 812
DpnII GATC 4 cut(s) 276, 315, 510, 810
EaeI YGGCCR 2 cut(s) 191, 295
Eam1104I CTCTTC 2 cut(s) 416, 641
EarI CTCTTC 2 cut(s) 416, 641
Eco130I CCWWGG 2 cut(s) 536, 675
Eco24I GRGCYC 1 cut(s) 485
Eco31I GGTCTC 2 cut(s) 245, 347
Eco57I CTGAAG 3 cut(s) 219, 234, 786
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 536, 675
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 2 cut(s) 536, 675
FaeI CATG 1 cut(s) 383
FaiI YATR 5 cut(s) 311, 348, 381, 501, 533
FatI CATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 6 cut(s) 162, 165, 210, 270, 327, 528
FokI GGATG 1 cut(s) 508
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 6 cut(s) 162, 165, 210, 270, 327, 528
FspBI CTAG 2 cut(s) 359, 402
GluI GCNGC 6 cut(s) 162, 165, 210, 270, 327, 528
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 4 cut(s) 10, 119, 193, 297
HapII CCGG 1 cut(s) 330
Hin1II CATG 1 cut(s) 383
HindIII AAGCTT 2 cut(s) 281, 365
HinfI GANTC 2 cut(s) 740, 786
HpaII CCGG 1 cut(s) 330
HphI GGTGA 5 cut(s) 116, 242, 253, 430, 721
Hpy166II GTNNAC 1 cut(s) 612
Hpy188III TCNNGA 4 cut(s) 304, 446, 508, 727
Hpy8I GTNNAC 1 cut(s) 612
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 4 cut(s) 209, 568, 706, 710
HpyCH4III ACNGT 3 cut(s) 134, 518, 733
HpyCH4V TGCA 7 cut(s) 164, 221, 350, 521, 566, 599, 801
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 218, 254, 527, 770
HpyF3I CTNAG 8 cut(s) 153, 244, 427, 462, 681, 755, 780, 825
Hsp92II CATG 1 cut(s) 383
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 4 cut(s) 276, 315, 510, 810
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 398, 820
Lsp1109I GCAGC 4 cut(s) 148, 176, 221, 539
LweI GCATC 2 cut(s) 530, 760
MaeI CTAG 2 cut(s) 359, 402
MaeIII GTNAC 3 cut(s) 43, 104, 382
MalI GATC 4 cut(s) 278, 317, 512, 812
MboI GATC 4 cut(s) 276, 315, 510, 810
MboII GAAGA 5 cut(s) 433, 611, 658, 779, 820
MhlI GDGCHC 1 cut(s) 485
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 3 cut(s) 26, 413, 556
MluNI TGGCCA 1 cut(s) 297
MmeI TCCRAC 2 cut(s) 55, 379
MnlI CCTC 8 cut(s) 42, 64, 134, 433, 457, 563, 603, 642
Mox20I TGGCCA 1 cut(s) 297
MreI CGCCGGCG 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 297
MseI TTAA 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 212
MspCI CTTAAG 1 cut(s) 476
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 5 cut(s) 158, 218, 254, 527, 770
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 4 cut(s) 276, 315, 510, 810
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 3 cut(s) 325, 657, 822
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 740, 786
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 6 cut(s) 163, 166, 211, 271, 328, 529
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 325, 657, 822
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 6 cut(s) 162, 165, 210, 270, 327, 528
Sau3AI GATC 4 cut(s) 276, 315, 510, 810
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 485
SfaNI GCATC 2 cut(s) 530, 760
SfcI CTRYAG 1 cut(s) 162
SgrAI CRCCGGYG 1 cut(s) 329
SmlI CTYRAG 3 cut(s) 302, 476, 725
SmoI CTYRAG 3 cut(s) 302, 476, 725
Sse9I AATT 3 cut(s) 26, 413, 556
SsiI CCGC 4 cut(s) 270, 327, 333, 525
SspMI CTAG 2 cut(s) 359, 402
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 2 cut(s) 536, 675
TaaI ACNGT 3 cut(s) 134, 518, 733
TaqI TCGA 1 cut(s) 493
TasI AATT 3 cut(s) 26, 413, 556
TauI GCSGC 2 cut(s) 272, 329
TfiI GAWTC 2 cut(s) 740, 786
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 4 cut(s) 325, 523, 666, 808
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 4 cut(s) 161, 164, 209, 527
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 368
TspRI CASTG 4 cut(s) 325, 523, 666, 808
Van91I CCANNNNNTGG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 476
XapI RAATTY 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 2 cut(s) 359, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.