Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

22458465 .. 22459502

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCCTTTGCATTTGCCTCCCGCACTCCACATGACCCCCCTCTCTTCTTCTTCTTCATAAATACCCCTCATCACCCTCCACTTCACTTCACCACCCTCTCTTCCCTAGCCTCTTATCTTCAAACCTCTCCCTTCTCTACTCCCAAACTACCTACTTTCTCTTCGAAAATGGCAATCCGAAAGTACAACAAGCTCCCCCAAACCGCAGTCCTCAAGCAGATCCTCAAGCGATGCTCGAGCTTGGGGAAGAAGCAACACGGCTACGACGAAAATGGTCTTCCCATCGACGTCCCCAAGGGCCATTTCCCGGTTTATGTGGGAGAGAACAGGACGAGGTACATTGTTCCCATCTCCTTCTTGACTCACCCTGAGTTCCAGTGCCTCCTCCGTCAAGCCGAAGAAGAGTTCGGGTTCGATCACGACATGGGCCTCACGATTCCTTGCGAGGAAGTCGTTTTTCGCTCTTTGACTTCCACGCTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

9.05

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	83 - 159	4.3e-28	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AciI	CCGC	2 cut(s)	22, 204
AclWI	GGATC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	185, 338
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	193, 240
AluI	AGCT	2 cut(s)	193, 240
AlwI	GGATC	1 cut(s)	214
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	298, 427
AspS9I	GGNCC	2 cut(s)	298, 427
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	65, 82, 356
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	269
BccI	CCATC	2 cut(s)	290, 356
BceAI	ACGGC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	298, 427
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	197, 209
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	374
BshFI	GGCC	2 cut(s)	300, 429
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	300, 429
BsoBI	CYCGRG	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	219, 415
BspACI	CCGC	2 cut(s)	22, 204
BspANI	GGCC	2 cut(s)	300, 429
BspCNI	CTCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	219, 415
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	294
Bst6I	CTCTTC	4 cut(s)	50, 106, 166, 396
BstACI	GRCGYC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	369, 479
BstKTI	GATC	2 cut(s)	222, 418
BstMBI	GATC	2 cut(s)	219, 415
BstSCI	CCNGG	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	300, 429
BtgZI	GCGATG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	298, 427
Csp6I	GTAC	2 cut(s)	184, 337
CviAII	CATG	2 cut(s)	32, 424
CviJI	RGCY	7 cut(s)	110, 193, 240, 261, 300, 395, 429
CviKI_1	RGCY	7 cut(s)	110, 193, 240, 261, 300, 395, 429
CviQI	GTAC	2 cut(s)	184, 337
DdeI	CTNAG	2 cut(s)	369, 479
DpnI	GATC	2 cut(s)	221, 417
DpnII	GATC	2 cut(s)	219, 415
Eam1104I	CTCTTC	4 cut(s)	50, 106, 166, 396
EarI	CTCTTC	4 cut(s)	50, 106, 166, 396
Eco130I	CCWWGG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	35, 427
FaiI	YATR	4 cut(s)	33, 59, 315, 425
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	31, 423
FauI	CCCGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	300, 429
HapII	CCGG	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	35, 427
HinfI	GANTC	2 cut(s)	361, 436
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	3 cut(s)	65, 82, 356
Hpy188I	TCNGA	2 cut(s)	179, 482
Hpy188III	TCNNGA	3 cut(s)	358, 419, 433
Hpy99I	CGWCG	2 cut(s)	269, 290
HpyAV	CCTTC	2 cut(s)	142, 364
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	369, 479
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	35, 427
Kzo9I	GATC	2 cut(s)	219, 415
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	4 cut(s)	313, 321, 381, 389
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	288
MalI	GATC	2 cut(s)	221, 417
MboI	GATC	2 cut(s)	219, 415
MflI	RGATCY	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	355
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	308
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	219, 415
NlaIII	CATG	2 cut(s)	35, 427
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	298, 427
PspXI	VCTCGAGB	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	185, 338
RsaNI	GTAC	2 cut(s)	184, 337
Sau3AI	GATC	2 cut(s)	219, 415
Sau96I	GGNCC	2 cut(s)	298, 427
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	6 cut(s)	128, 154, 195, 242, 291, 338
SfaNI	GCATC	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	235
SmlI	CTYRAG	3 cut(s)	212, 224, 235
SmoI	CTYRAG	3 cut(s)	212, 224, 235
SsiI	CCGC	2 cut(s)	22, 204
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	164, 236, 285, 414
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	383
XhoI	CTCGAG	1 cut(s)	235
XspI	CTAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.