Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

22372838 .. 22373327

Gene Structure 490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATTGGCACTAGCCCAGCCACCGTACACAGCCACCATGACCCTCAGATCAACCCAATACTCAATCCCAACCCATCTCCTATTCGGTCATCAAAAGAAACCCATCTCCGACCTCCAAACCCTCTTCGTCTCCAAGATGGGCGAGCTCATCAAATCCGGCGAGTCCCGACGTCAAAACGAACCGAGGACCAAGCTAGGAGCCTCGACATCCCTCTCTCGATCCTCGACGACCACCCGAAAATCGATCTGGCCATCGACGGCGTCGACGAGGTCTACCCCGATCTGGATTTGGTCAAGGGCCGCGGTTGCACGTTGTTAAAGGAGAAGATGGTGGAGGCCACGTCGGAGAAGTTCGAGGTGGTCGCCGACGAGACGAAACTGGTGACGGGGCTGGGAGGAAGCGGGCTGGCAATGCGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

141

Amino Acids

15.47

Weight (kDa)

6.29

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	55 - 134	4.9e-26	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	173
AccI	GTMKAC	2 cut(s)	264, 273
AccII	CGCG	1 cut(s)	303
AciI	CCGC	3 cut(s)	301, 303, 402
AclWI	GGATC	1 cut(s)	214
AcoI	YGGCCR	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	170, 261
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	342
AluBI	AGCT	2 cut(s)	146, 194
AluI	AGCT	2 cut(s)	146, 194
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	134, 365
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	3 cut(s)	249, 298, 336
AspS9I	GGNCC	2 cut(s)	187, 298
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	5 cut(s)	82, 111, 131, 260, 322
BceAI	ACGGC	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	134, 365
BfaI	CTAG	2 cut(s)	12, 195
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	187, 298
BmiI	GGNNCC	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	243
BsaHI	GRCGYC	2 cut(s)	170, 261
BsaJI	CCNNGG	2 cut(s)	183, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	417
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	183, 301
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	384
BseYI	CCCAGC	2 cut(s)	16, 391
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	251, 300, 338
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	134, 365
BsmBI	CGTCTC	2 cut(s)	134, 365
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	251, 300, 338
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	48, 219, 244, 280
BspACI	CCGC	3 cut(s)	301, 303, 402
BspANI	GGCC	3 cut(s)	251, 300, 338
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	183, 301
BssMI	GATC	4 cut(s)	48, 219, 244, 280
BssNI	GRCGYC	2 cut(s)	170, 261
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	170, 261
BstC8I	GCNNGC	3 cut(s)	144, 404, 408
BstDEI	CTNAG	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	4 cut(s)	51, 222, 247, 283
BstMAI	GTCTC	2 cut(s)	134, 365
BstMBI	GATC	4 cut(s)	48, 219, 244, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 412
BstUI	CGCG	1 cut(s)	303
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	251, 300, 338
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	3 cut(s)	144, 404, 408
Cfr13I	GGNCC	2 cut(s)	187, 298
Cfr42I	CCGCGG	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	4 cut(s)	50, 221, 246, 282
DpnII	GATC	4 cut(s)	48, 219, 244, 280
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
Esp3I	CGTCTC	2 cut(s)	134, 365
FaeI	CATG	1 cut(s)	41
FaiI	YATR	1 cut(s)	39
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	2 cut(s)	264, 273
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	12, 195
GluI	GCNGC	1 cut(s)	301
GsaI	CCCAGC	2 cut(s)	20, 395
HaeIII	GGCC	3 cut(s)	251, 300, 338
HapII	CCGG	1 cut(s)	157
HgaI	GACGC	1 cut(s)	250
Hin1I	GRCGYC	2 cut(s)	170, 261
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	162
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	3 cut(s)	28, 265, 274
Hpy188I	TCNGA	3 cut(s)	48, 110, 346
Hpy188III	TCNNGA	4 cut(s)	166, 217, 284, 423
Hpy8I	GTNNAC	3 cut(s)	28, 265, 274
Hpy99I	CGWCG	7 cut(s)	172, 230, 260, 266, 269, 346, 371
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	3 cut(s)	170, 311, 341
HpyCH4V	TGCA	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 412
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	3 cut(s)	170, 311, 341
Hsp92I	GRCGYC	2 cut(s)	170, 261
Hsp92II	CATG	1 cut(s)	41
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	48, 219, 244, 280
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	30, 170, 233, 269, 365, 377, 392
MaeI	CTAG	2 cut(s)	12, 195
MaeII	ACGT	3 cut(s)	170, 311, 341
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	4 cut(s)	50, 221, 246, 282
MboI	GATC	4 cut(s)	48, 219, 244, 280
MboII	GAAGA	2 cut(s)	116, 337
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	251
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	133, 324
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	306, 412
NdeII	GATC	4 cut(s)	48, 219, 244, 280
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 264
PflFI	GACNNNGTC	2 cut(s)	260, 269
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	148
PspFI	CCCAGC	2 cut(s)	16, 391
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	187, 298
PsyI	GACNNNGTC	2 cut(s)	260, 269
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	4 cut(s)	48, 219, 244, 280
Sau96I	GGNCC	2 cut(s)	187, 298
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	8 cut(s)	115, 148, 173, 196, 273, 314, 344, 360
Sfr303I	CCGCGG	1 cut(s)	304
SgrBI	CCGCGG	1 cut(s)	304
SgrDI	CGTCGACG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	187
SsiI	CCGC	3 cut(s)	301, 303, 402
SspMI	CTAG	2 cut(s)	12, 195
SstI	GAGCTC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	3 cut(s)	173, 314, 344
TaqI	TCGA	7 cut(s)	204, 218, 225, 243, 255, 264, 354
TaqII	GACCGA	1 cut(s)	75
TauI	GCSGC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	382
Tth111I	GACNNNGTC	2 cut(s)	260, 269
VpaK11BI	GGWCC	1 cut(s)	187
XmiI	GTMKAC	2 cut(s)	264, 273
XspI	CTAG	2 cut(s)	12, 195
ZraI	GACGTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.