Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

45616521 .. 45617767

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG264200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCAGCCAAGCTTATGCATGCGGTTCAGTACGACATCCACGGTGGAGGACCTTCTGGTTTAAAGCCTGTTCCAGTTCCAGTTCCAATTCCCACTCCTAAGAAAAATGAAGTTTTACTGAAGCTGGAAGCAGCAAGTCTAAATGCAGGTGATTATAAGATTCAGAAAGGCCAGGCGCGACGCCGTGACCTATTTTCCCGCGCAAATTGCCTCACATTCCTGGTTGTAGAAGTTGGAGAAGGAGTCAAGAACTTCAAAGTGGGTGACAAAGTTGTGGCGATGCTCAGCTATGGTAATGGAGGTGGACTCGGTGAGTTTGCTGCAGCTAATGCCGAAATGGTAGTTGCTAGGTCTTCCGACGTTTCAGCGGCAGAAGGTGCAGGCTTACCCGTTGCCGCTCTCTCTGCTCACTGGGCTCTCACCAAAGATGCAGAGATCAAGCTTGATGGAACAGGCGAGCAGAAGCCGGTGCCTCTGGTAACGTCGGTCTCTATGCAATCCAACTGGCAAAGCTCGGAAACGCTCATGTCACCGCCACTTGTGGAGCTCGTAACATTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

187

Amino Acids

19.61

Weight (kDa)

6.84

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	35 - 115	1.3e-07	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	398
AccII	CGCG	2 cut(s)	178, 201
AciI	CCGC	5 cut(s)	23, 199, 368, 396, 533
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	256, 559
AjnI	CCWGG	2 cut(s)	171, 219
AluBI	AGCT	7 cut(s)	13, 124, 288, 326, 442, 513, 547
AluI	AGCT	7 cut(s)	13, 124, 288, 326, 442, 513, 547
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	1 cut(s)	493
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	5, 131, 320, 323
AspLEI	GCGC	2 cut(s)	178, 203
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	5 cut(s)	161, 275, 323, 412, 522
AvaII	GGWCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	418, 549
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	17, 143, 307, 335
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	173, 221
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	348, 562
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	6 cut(s)	6, 132, 321, 324, 369, 396
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	6 cut(s)	7, 133, 322, 325, 370, 397
Bme1390I	CCNGG	2 cut(s)	173, 221
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	2 cut(s)	173, 221
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	270, 418
BmuI	ACTGGG	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu1102I	GCTNAGC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	4 cut(s)	74, 80, 416, 509
BseBI	CCWGG	2 cut(s)	173, 221
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	298
BseNI	ACTGG	4 cut(s)	74, 80, 416, 509
BseXI	GCAGC	4 cut(s)	17, 143, 307, 335
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	178, 201
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	418, 549
Bsp143I	GATC	1 cut(s)	435
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	5 cut(s)	23, 199, 368, 396, 533
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	178, 201
BspLI	GGNNCC	1 cut(s)	471
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	1 cut(s)	398
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	4 cut(s)	74, 80, 416, 509
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	173, 221
Bst4CI	ACNGT	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	2 cut(s)	329, 377
BstC8I	GCNNGC	3 cut(s)	21, 382, 458
BstDEI	CTNAG	2 cut(s)	99, 284
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	2 cut(s)	178, 201
BstHHI	GCGC	2 cut(s)	178, 203
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	435
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 329, 377, 404, 413
BstNI	CCWGG	2 cut(s)	173, 221
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	171, 219
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	2 cut(s)	178, 201
BstV1I	GCAGC	4 cut(s)	17, 143, 307, 335
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	21, 382, 458
CfoI	GCGC	2 cut(s)	178, 203
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	20, 526
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	99, 284
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DraI	TTTAAA	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	418, 549
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	171, 219
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	418, 549
FaeI	CATG	2 cut(s)	23, 529
FaiI	YATR	6 cut(s)	17, 21, 156, 291, 494, 527
FatI	CATG	2 cut(s)	19, 525
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	6 cut(s)	6, 132, 321, 324, 369, 396
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	2 cut(s)	418, 549
Fsp4HI	GCNGC	6 cut(s)	6, 132, 321, 324, 369, 396
FspBI	CTAG	2 cut(s)	348, 562
GlaI	GCGC	2 cut(s)	177, 202
GluI	GCNGC	6 cut(s)	6, 132, 321, 324, 369, 396
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	178, 203
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	23, 529
Hin6I	GCGC	2 cut(s)	176, 201
HinP1I	GCGC	2 cut(s)	176, 201
HindIII	AAGCTT	2 cut(s)	11, 440
HinfI	GANTC	3 cut(s)	160, 243, 306
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	5 cut(s)	161, 275, 323, 412, 522
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	165, 358, 517
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	3 cut(s)	183, 362, 487
HpyAV	CCTTC	3 cut(s)	63, 233, 368
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	2 cut(s)	360, 482
HpyCH4V	TGCA	6 cut(s)	19, 146, 323, 380, 431, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 329, 377, 404, 413
HpyF3I	CTNAG	2 cut(s)	99, 284
HpySE526I	ACGT	2 cut(s)	360, 482
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	23, 529
HspAI	GCGC	2 cut(s)	176, 201
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	4 cut(s)	17, 143, 307, 335
LweI	GCATC	2 cut(s)	270, 418
MaeI	CTAG	2 cut(s)	348, 562
MaeII	ACGT	2 cut(s)	360, 482
MaeIII	GTNAC	5 cut(s)	185, 263, 478, 528, 550
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	1 cut(s)	435
MboII	GAAGA	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	418, 549
MluCI	AATT	2 cut(s)	87, 205
MlyI	GAGTC	2 cut(s)	252, 300
MmeI	TCCRAC	3 cut(s)	214, 381, 525
MnlI	CCTC	4 cut(s)	41, 221, 293, 483
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	173, 221
MvaI	CCWGG	2 cut(s)	173, 221
MvnI	CGCG	2 cut(s)	178, 201
MwoI	GCNNNNNNNGC	5 cut(s)	207, 329, 377, 404, 413
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	2 cut(s)	23, 529
NlaIV	GGNNCC	1 cut(s)	471
NmuCI	GTSAC	3 cut(s)	185, 263, 528
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	6 cut(s)	7, 133, 322, 325, 370, 397
PleI	GAGTC	2 cut(s)	251, 300
PpsI	GAGTC	2 cut(s)	251, 300
PpuMI	RGGWCCY	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	171, 219
PspGI	CCWGG	2 cut(s)	171, 219
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	6 cut(s)	6, 132, 321, 324, 369, 396
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	252, 300
ScrFI	CCNGG	2 cut(s)	173, 221
SduI	GDGCHC	2 cut(s)	418, 549
SfaNI	GCATC	2 cut(s)	270, 418
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	50
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	87, 205
SsiI	CCGC	5 cut(s)	23, 199, 368, 396, 533
SspMI	CTAG	2 cut(s)	348, 562
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	2 cut(s)	171, 219
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	2 cut(s)	363, 485
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	2 cut(s)	87, 205
TauI	GCSGC	2 cut(s)	371, 398
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	3 cut(s)	185, 263, 528
TseI	GCWGC	4 cut(s)	5, 131, 320, 323
Tsp45I	GTSAC	3 cut(s)	185, 263, 528
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	2 cut(s)	348, 562
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.