Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

29832929 .. 29833412

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1168000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTGAAGGATGAGTTGTTTTGGGAATTTAAGCATTCAATGTCTTTGAGCTCTAGGCTGCTATCTGTAGTTGTAGAAGTTGGACAAGGTGCCAAAAAGTTCAAATTCGGTGACAAAGTTGTTGTACTGCTCCGCCATTTCAGTGGAGGAGGACTGGCTGAGTTTGCTGCAACTAATGAGAGATTAATGGTTGCTAGGCCACCTGAAGTTTCAGCTGCCGATGGCGCATGCCTACCGGTTGCCGGTCTCACAGCTCCCCAGGCTCTCGCCCAATGTGGGGTCAAGCTTGACGGAACTGGTCAAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

104

Amino Acids

10.93

Weight (kDa)

8.69

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	26, 104
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	3 cut(s)	242, 276, 277
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	7, 39, 103
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	51, 215, 254, 286
AluI	AGCT	4 cut(s)	51, 215, 254, 286
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	3 cut(s)	58, 167, 215
ApoI	RAATTY	2 cut(s)	26, 104
AseI	ATTAAT	1 cut(s)	185
AsiGI	ACCGGT	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	45, 154, 202
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	54, 195
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	59, 168, 216
BlsI	GCNGC	3 cut(s)	60, 169, 217
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 276, 277
Bse118I	RCCGGY	2 cut(s)	235, 242
Bse1I	ACTGG	2 cut(s)	159, 301
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	3 cut(s)	242, 276, 277
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	159, 301
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	45, 154, 202
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	236, 243
BslI	CCNNNNNNNGG	3 cut(s)	242, 276, 277
BsmAI	GTCTC	1 cut(s)	251
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	235, 242
BsrI	ACTGG	2 cut(s)	159, 301
BssAI	RCCGGY	2 cut(s)	235, 242
BssECI	CCNNGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 224, 260
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	3 cut(s)	45, 154, 202
BstXI	CCANNNNNNTGG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	2 cut(s)	235, 242
Csp6I	GTAC	1 cut(s)	125
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	8 cut(s)	51, 58, 158, 199, 215, 254, 263, 286
CviKI_1	RGCY	8 cut(s)	51, 58, 158, 199, 215, 254, 263, 286
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	1 cut(s)	231
FaiI	YATR	1 cut(s)	229
FatI	CATG	1 cut(s)	227
Fnu4HI	GCNGC	3 cut(s)	59, 168, 216
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	59, 168, 216
FspBI	CTAG	2 cut(s)	54, 195
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	59, 168, 216
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	2 cut(s)	236, 243
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	231
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	284
HpaII	CCGG	2 cut(s)	236, 243
HphI	GGTGA	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 224, 260
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	225
LmnI	GCTCC	2 cut(s)	135, 259
LpnPI	CCDG	7 cut(s)	140, 216, 245, 249, 256, 272, 282
Lsp1109I	GCAGC	3 cut(s)	45, 154, 202
MaeI	CTAG	2 cut(s)	54, 195
MaeIII	GTNAC	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	26, 104
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	140, 143
MseI	TTAA	2 cut(s)	30, 185
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	236, 243
MspR9I	CCNGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	3 cut(s)	164, 224, 260
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	231
PctI	GAATGC	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	60, 169, 217
PshBI	ATTAAT	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	30, 185
SatI	GCNGC	3 cut(s)	59, 168, 216
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	53, 91, 205, 217, 256, 288
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	231
Sse9I	AATT	2 cut(s)	26, 104
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	2 cut(s)	54, 195
SstI	GAGCTC	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	258
TasI	AATT	2 cut(s)	26, 104
TatI	WGTACW	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	30, 185
Tru9I	TTAA	2 cut(s)	30, 185
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	3 cut(s)	58, 167, 215
Tsp45I	GTSAC	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	185
XapI	RAATTY	2 cut(s)	26, 104
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	2 cut(s)	54, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.